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2011-11-11	Bo Li	add optional field XS for cufflinks	commit \| commitdiff \| tree
2011-11-10	Bo Li	rsem v1.1.14, add --sampling-for-bam option, modify...	commit \| commitdiff \| tree
2011-11-06	Bo Li	rsem v1.1.13, speed up EM by only updating model parameters...	commit \| commitdiff \| tree
2011-10-19	Bo Li	rsem v1.1.12 extract-transcript-to-gene-map-from-trinity...	commit \| commitdiff \| tree
2011-10-19	Bo Li	rsem v1.1.12, add a script to extract transcript-to...	commit \| commitdiff \| tree
2011-08-25	Bo Li	rsem v1.1.11, allow spaces appear in field seqname...	commit \| commitdiff \| tree
2011-08-25	Bo Li	rsem v1.1.11	commit \| commitdiff \| tree
2011-08-12	Bo Li	fix one bug will lead using not the last theta value...	commit \| commitdiff \| tree
2011-08-11	Bo Li	rsem v1.2.0	commit \| commitdiff \| tree
2011-07-26	Bo Li	MAPQ changed	commit \| commitdiff \| tree
2011-05-27	Bo Li	rsem v1.1.9	commit \| commitdiff \| tree
2011-05-24	Bo Li	rsem-plot-model updated	commit \| commitdiff \| tree
2011-04-26	Bo Li	fixed a bug in rsem-plot-model	commit \| commitdiff \| tree
2011-04-25	Bo Li	add feature that jump lines with # in gtf	commit \| commitdiff \| tree
2011-04-25	Bo Li	back to single threaded Gibbs	commit \| commitdiff \| tree
2011-04-25	Bo Li	back to single thread Gibbs	commit \| commitdiff \| tree
2011-04-25	Bo Li	Version with Gibbs parallelized	commit \| commitdiff \| tree
2011-04-21	Bo Li	a bug in simulation.cpp is fixed.	commit \| commitdiff \| tree
2011-04-21	Bo Li	a bug in *?Model.h was fixed.	commit \| commitdiff \| tree
2011-04-19	Bo Li	some changes	commit \| commitdiff \| tree
2011-04-18	Bo Li	RSEM v1.1.8	commit \| commitdiff \| tree
2011-04-18	Bo Li	RSEM v1.1.8	commit \| commitdiff \| tree
2011-04-17	Bo Li	lots of changes	commit \| commitdiff \| tree
2011-04-09	Bo Li	fixed a bug for transcript set as reference	commit \| commitdiff \| tree
2011-04-02	Bo Li	fix a bug in partition reads for parallel	commit \| commitdiff \| tree
2011-03-22	Bo Li	README.md is updated to include C++, Perl and R as...	commit \| commitdiff \| tree
2011-03-18	Bo Li	a bug in rsem-plot-model is fixed	commit \| commitdiff \| tree
2011-03-18	Bo Li	v1.1.5.b	commit \| commitdiff \| tree
2011-03-17	Bo Li	Fixed bugs in the Gibbs sampler. Fixed a bug which...	commit \| commitdiff \| tree
2011-03-15	Bo Li	rsem-plot-model was changed again	commit \| commitdiff \| tree
2011-03-15	Bo Li	rsem-plot-model was modified	commit \| commitdiff \| tree
2011-03-11	Bo Li	rename plotModel.R to rsem-plot-model	commit \| commitdiff \| tree
2011-03-11	Bo Li	README.md changed	commit \| commitdiff \| tree
2011-03-11	Bo Li	Enable RSEM to visualize the model learned from data	commit \| commitdiff \| tree
2011-03-09	Bo Li	Fixed a bug related to output format. Grant read permession...	commit \| commitdiff \| tree
2011-02-21	Bo Li	README.md modified	commit \| commitdiff \| tree
2011-02-21	Bo Li	README.md	commit \| commitdiff \| tree
2011-02-21	Bo Li	README.md modified to display correctly in github	commit \| commitdiff \| tree
2011-02-21	Bo Li	README.md changed	commit \| commitdiff \| tree
2011-02-17	Bo Li	change README.txt to README.md	commit \| commitdiff \| tree
2011-02-17	Bo Li	change README.txt to README.md	commit \| commitdiff \| tree
2011-02-17	Bo Li	v1.1.2	commit \| commitdiff \| tree
2011-02-17	Bo Li	Normalized Read Fraction(nrf) are eliminated from outputs...	commit \| commitdiff \| tree
2011-02-17	Bo Li	Normalized Read Fraction(nrf) are eliminated from outputs...	commit \| commitdiff \| tree
2011-02-11	Bo Li	Bugs in SingleModel.h are fixed.	commit \| commitdiff \| tree
2011-02-09	Bo Li	RSEM Source Codes	commit \| commitdiff \| tree

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