back to single thread Gibbs

diff --git a/calcCI.cpp b/calcCI.cpp
index f3964d18b8472d65a42b07355041ddeaed82a045..c9ccce5909a2be59baabe8b3345232256e8a2da4 100644 (file)
--- a/calcCI.cpp
+++ b/calcCI.cpp
@@ -382,14 +382,12 @@ int main(int argc, char* argv[]) {
 
        delete[] tau_denoms;
 
-       /*
        sprintf(command, "rm -f %s", tmpF);
        int status = system(command);
        if (status != 0) {
                fprintf(stderr, "Cannot delete %s!\n", tmpF);
                exit(-1);
        }
-        */
 
        return 0;
 }

diff --git a/rsem-calculate-expression b/rsem-calculate-expression
index 68aa2587abcfb96bf6fa8639ebb1876d4e7c4d83..1535147976a811383f030d41c64768f6e590cefa 100755 (executable)
--- a/rsem-calculate-expression
+++ b/rsem-calculate-expression
@@ -286,7 +286,7 @@ if ($genBamF) {
 
 if ($calcCI) {
     $command = $dir."rsem-run-gibbs $refName $sampleName $sampleToken $BURNIN $NSAMPLES $SAMPLEGAP";
-    $command .= " -p $nThreads";
+#    $command .= " -p $nThreads";
     if ($quiet) { $command .= " -q"; }
     print "$command\n";
     $status = system($command);