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(parent: 7777bfc) | patch
changed output format to contain FPKM etc. ; fixed a bug for paired-end reads
authorBo Li <bli@cs.wisc.edu>
Mon, 10 Sep 2012 21:22:52 +0000 (16:22 -0500)
committerBo Li <bli@cs.wisc.edu>
Mon, 10 Sep 2012 21:22:52 +0000 (16:22 -0500)
commit9c2e46183a19d661f0a618a8eabe8ce1f6a8e2d6
tree9e386952c4287b8aeea77135d46ad18b1b7ef297tree | snapshot
parent7777bfc71742d4e239d1297d2e3de058895f4ce1commit | diff
changed output format to contain FPKM etc. ; fixed a bug for paired-end reads
115 files changed:
BamWriter.h diff | blob | history
Buffer.h diff | blob | history
EBSeq/DESCRIPTION [deleted file] blob | history
EBSeq/EBSeq_1.1.3.tar.gz [new file with mode: 0644] blob
EBSeq/NAMESPACE [deleted file] blob | history
EBSeq/R/CheckNg.R [deleted file] blob | history
EBSeq/R/DenNHist.R [deleted file] blob | history
EBSeq/R/DenNHistTable.R [deleted file] blob | history
EBSeq/R/EBMultiTest.R [deleted file] blob | history
EBSeq/R/EBTest.R [deleted file] blob | history
EBSeq/R/GeneMultiSimu.R [deleted file] blob | history
EBSeq/R/GeneSimu.R [deleted file] blob | history
EBSeq/R/GeneSimuAt.R [deleted file] blob | history
EBSeq/R/GetData.R [deleted file] blob | history
EBSeq/R/GetMultiPP.R [deleted file] blob | history
EBSeq/R/GetNg.R [deleted file] blob | history
EBSeq/R/GetPP.R [deleted file] blob | history
EBSeq/R/GetPatterns.R [deleted file] blob | history
EBSeq/R/IsoSimu.R [deleted file] blob | history
EBSeq/R/IsoSimuAt.R [deleted file] blob | history
EBSeq/R/Likefun.R [deleted file] blob | history
EBSeq/R/LikefunMulti.R [deleted file] blob | history
EBSeq/R/LikefunMultiDVDP.R [deleted file] blob | history
EBSeq/R/LikefunMultiEMP.R [deleted file] blob | history
EBSeq/R/LogN.R [deleted file] blob | history
EBSeq/R/LogNMulti.R [deleted file] blob | history
EBSeq/R/LogNMultiDVDP.R [deleted file] blob | history
EBSeq/R/LogNMultiEMP.R [deleted file] blob | history
EBSeq/R/MedianNorm.R [deleted file] blob | history
EBSeq/R/MergeGene.R [deleted file] blob | history
EBSeq/R/MergeIso.R [deleted file] blob | history
EBSeq/R/PlotFDTP.R [deleted file] blob | history
EBSeq/R/PlotFPTP.R [deleted file] blob | history
EBSeq/R/PlotPattern.R [deleted file] blob | history
EBSeq/R/PlotTopCts.R [deleted file] blob | history
EBSeq/R/PolyFitPlot.R [deleted file] blob | history
EBSeq/R/PoolMatrix.R [deleted file] blob | history
EBSeq/R/PostFC.R [deleted file] blob | history
EBSeq/R/QQP.R [deleted file] blob | history
EBSeq/R/QuantileNorm.R [deleted file] blob | history
EBSeq/R/RankNorm.R [deleted file] blob | history
EBSeq/R/TPFDRplot.R [deleted file] blob | history
EBSeq/R/TopCts.R [deleted file] blob | history
EBSeq/R/beta.mom.R [deleted file] blob | history
EBSeq/R/crit_fun.R [deleted file] blob | history
EBSeq/R/f0.R [deleted file] blob | history
EBSeq/R/f1.R [deleted file] blob | history
EBSeq/blockmodeling_0.1.8.tar.gz [new file with mode: 0644] blob
EBSeq/calcClusteringInfo.cpp [new file with mode: 0644] blob
EBSeq/data/GeneEBresultGouldBart2.rda [deleted file] blob | history
EBSeq/data/GeneMat.rda [deleted file] blob | history
EBSeq/data/IsoEBresultGouldBart2.rda [deleted file] blob | history
EBSeq/data/IsoList.rda [deleted file] blob | history
EBSeq/data/MultiGeneMat.rda [deleted file] blob | history
EBSeq/data/datalist [deleted file] blob | history
EBSeq/demo/EBSeq.R [deleted file] blob | history
EBSeq/inst/doc/EBSeq_Vignette.pdf [deleted file] blob | history
EBSeq/makefile [new file with mode: 0644] blob
EBSeq/man/CheckNg.Rd [deleted file] blob | history
EBSeq/man/DenNHist.Rd [deleted file] blob | history
EBSeq/man/DenNHistTable.Rd [deleted file] blob | history
EBSeq/man/EBMultiTest.Rd [deleted file] blob | history
EBSeq/man/EBSeq_NingLeng-package.Rd [deleted file] blob | history
EBSeq/man/EBTest.Rd [deleted file] blob | history
EBSeq/man/GeneEBresultGouldBart2.Rd [deleted file] blob | history
EBSeq/man/GeneMultiSimu.Rd [deleted file] blob | history
EBSeq/man/GeneSimu.Rd [deleted file] blob | history
EBSeq/man/GeneSimuAt.Rd [deleted file] blob | history
EBSeq/man/GetData.Rd [deleted file] blob | history
EBSeq/man/GetMultiPP.Rd [deleted file] blob | history
EBSeq/man/GetNg.Rd [deleted file] blob | history
EBSeq/man/GetPP.Rd [deleted file] blob | history
EBSeq/man/GetPatterns.Rd [deleted file] blob | history
EBSeq/man/IsoEBresultGouldBart2.Rd [deleted file] blob | history
EBSeq/man/IsoSimu.Rd [deleted file] blob | history
EBSeq/man/IsoSimuAt.Rd [deleted file] blob | history
EBSeq/man/Likefun.Rd [deleted file] blob | history
EBSeq/man/LikefunMulti.Rd [deleted file] blob | history
EBSeq/man/LogN.Rd [deleted file] blob | history
EBSeq/man/LogNMulti.Rd [deleted file] blob | history
EBSeq/man/MedianNorm.Rd [deleted file] blob | history
EBSeq/man/MergeGene.Rd [deleted file] blob | history
EBSeq/man/MergeIso.Rd [deleted file] blob | history
EBSeq/man/PlotFDTP.Rd [deleted file] blob | history
EBSeq/man/PlotFPTP.Rd [deleted file] blob | history
EBSeq/man/PlotPattern.Rd [deleted file] blob | history
EBSeq/man/PlotTopCts.Rd [deleted file] blob | history
EBSeq/man/PolyFitPlot.Rd [deleted file] blob | history
EBSeq/man/PoolMatrix.Rd [deleted file] blob | history
EBSeq/man/PostFC.Rd [deleted file] blob | history
EBSeq/man/QQP.Rd [deleted file] blob | history
EBSeq/man/QuantileNorm.Rd [deleted file] blob | history
EBSeq/man/RankNorm.Rd [deleted file] blob | history
EBSeq/man/TPFDRplot.Rd [deleted file] blob | history
EBSeq/man/TopCts.Rd [deleted file] blob | history
EBSeq/man/beta.mom.Rd [deleted file] blob | history
EBSeq/man/crit_fun.Rd [deleted file] blob | history
EBSeq/man/f0.Rd [deleted file] blob | history
EBSeq/man/f1.Rd [deleted file] blob | history
EBSeq/rsem-for-ebseq-generate-ngvector-from-clustering-info [new file with mode: 0755] blob
EM.cpp diff | blob | history
Gibbs.cpp diff | blob | history
PairedEndModel.h diff | blob | history
PairedEndQModel.h diff | blob | history
SamParser.h diff | blob | history
SingleModel.h diff | blob | history
SingleQModel.h diff | blob | history
calcCI.cpp diff | blob | history
calcClusteringInfo.cpp [deleted file] blob | history
makefile diff | blob | history
rsem-calculate-expression diff | blob | history
rsem-for-ebseq-generate-ngvector-from-clustering-info [deleted file] blob | history
rsem-form-counts-matrix diff | blob | history
rsem-generate-ngvector diff | blob | history
simulation.cpp diff | blob | history
Debian packaging of rsem