3 %- Also NEED an '\alias' for EACH other topic documented here.
5 Plots of gene simulation result
8 %% ~~ A concise (1-5 lines) description of what the function does. ~~
11 MergeGene(GeneSIMout, Num, Path = "./")
13 %- maybe also 'usage' for other objects documented here.
16 The output of GeneSimu with OnlyData="F".
19 How many times the simulation ran.
22 The path to store the plots
26 %% ~~ If necessary, more details than the description above ~~
29 3 plots will be generated.
30 1 FPR vs TPR of each method
31 2 FDR vs TPR of each method
32 2 Top counts vs FDR of each method
34 A table will be generated which contains the FDR and TPR of each method.
35 (Using p-value=.05 or Posterior Probability=.95).
39 %% ~put references to the literature/web site here ~
48 %% ~Make other sections like Warning with \section{Warning }{....} ~
54 GeneGenerate=GeneSimu(DVDconstant=4, DVDqt1=NULL, DVDqt2=NULL, Conditions=rep(c(1,2),each=5), NumofSample=10, NumofGene=10000, DEGeneProp=.1, Phiconstant=NULL, Phi.qt1=.25, Phi.qt2=.75, Meanconstant=NULL, OnlyData="F")
56 GeneTable=MergeGene(GeneGenerate,1,"./")
58 % Add one or more standard keywords, see file 'KEYWORDS' in the
59 % R documentation directory.
61 \keyword{ ~kwd2 }% __ONLY ONE__ keyword per line