changed output format to contain FPKM etc. ; fixed a bug for paired-end reads

[rsem.git] / rsem-generate-ngvector

diff --git a/rsem-generate-ngvector b/rsem-generate-ngvector
index cd184b69ecfe5e1ccc69735add06d2ffaa74c7f4..99498c087d6240702abfcd40686373fdb1c92810 100755 (executable)
--- a/rsem-generate-ngvector
+++ b/rsem-generate-ngvector
@@ -17,10 +17,10 @@ pod2usage(-msg => "Invalid number of arguments!", -exitval => 2, -verbose => 2)
 my ($fn, $dir, $suf) = fileparse($0);
 my $command = "";
 
-$command = $dir."rsem-for-ebseq-calculate-clustering-info $k $ARGV[0] $ARGV[1].ump";
+$command = $dir."EBSeq/rsem-for-ebseq-calculate-clustering-info $k $ARGV[0] $ARGV[1].ump";
 &runCommand($command);
 
-$command = $dir."rsem-for-ebseq-generate-ngvector-from-clustering-info $ARGV[1].ump $ARGV[1].ngvec";
+$command = $dir."EBSeq/rsem-for-ebseq-generate-ngvector-from-clustering-info $ARGV[1].ump $ARGV[1].ngvec";
 &runCommand($command);
 
 # command, {err_msg}