3 %- Also NEED an '\alias' for EACH other topic documented here.
5 Isoforms of gene simulation result
10 MergeIso(IsoSIMout, Num, Path = "./")
12 %- maybe also 'usage' for other objects documented here.
15 The output of IsoSimu with OnlyData="F".
18 How many times the simulation ran.
22 The path to store the plots.
26 %% ~~ If necessary, more details than the description above ~~
29 3 plots will be generated.
30 1 FPR vs TPR of each method
31 2 FDR vs TPR of each method
32 2 Top counts vs FDR of each method
34 A table will be generated which contains the FDR and TPR of each method.
35 Each method will be ran on all the data and within group.
36 (Using p-value=.05 or Posterior Probability=.95).
41 %% ~put references to the literature/web site here ~
50 %% ~Make other sections like Warning with \section{Warning }{....} ~
56 IsoGenerate=IsoSimu(DVDconstant=NULL, DVDqt1=.97, DVDqt2=.98, Conditions=as.factor(rep(c(1,2),each=5)), NumofSample=10, NumofIso=NULL, DEIsoProp=.1, Phiconstant=NULL, Phi.qt1=.25, Phi.qt2=.75, OnlyData="F" )
58 IsoTable=MergeIso(IsoGenerate,1,"./")
60 % Add one or more standard keywords, see file 'KEYWORDS' in the
61 % R documentation directory.
63 \keyword{ ~kwd2 }% __ONLY ONE__ keyword per line