adding code for confusion matrix

diff --git a/classifysharedcommand.cpp b/classifysharedcommand.cpp
index 61914629732f3d690ade523b632d28b6b562431f..482a3eb7969007ba592c5e061c455be24d0cae55 100755 (executable)
--- a/classifysharedcommand.cpp
+++ b/classifysharedcommand.cpp
@@ -375,6 +375,7 @@ void ClassifySharedCommand::processSharedAndDesignData(vector<SharedRAbundVector
         
         randomForest.populateDecisionTrees();
         randomForest.calcForrestErrorRate();
+        //randomForest.printConfusionMatrix(intToTreatmentMap);
         
         map<string, string> variables; 
         variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(sharedfile)) + ".RF.";