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rewrote interval_set in bitarray.rb = 20 x faster
2011-10-18 martinahansenrewrote interval_set in bitarray.rb = 20 x faster
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2011-10-18 martinahansenmemory optimization on bitarray.rb
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2011-10-17 martinahansenadded more methods to bitarray.rb
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2011-10-17 martinahansenadded methods to bitarray.rb
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2011-10-17 martinahansenbitarray.rb bits_on method speedup x 3
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2011-10-17 martinahansencleanup of bitarray.rb
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2011-10-17 martinahansenchanged bitwise operators in bitarray to inline
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2011-10-17 martinahansenupgraded bitarray to work with narray for speed
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2011-10-17 martinahansenadded comment to bitarray.rb
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2011-10-14 martinahansenfixed biopieces installer
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2011-10-14 martinahansenslight change to installer
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2011-10-14 martinahansenadded biopieces installer
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2011-10-14 martinahansenfixed critical missing uc bug in uniq_seq
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2011-10-13 martinahansenfixed fastq issue
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2011-10-13 martinahansenfixed last of fasta problems
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2011-10-13 martinahansenfixed assemblers
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2011-10-13 martinahansenfixing broken biopieces
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2011-10-13 martinahansensmoothed ruby code to get rid of warnings
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2011-10-13 martinahansenbeautifying fasta.rb
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2011-10-13 martinahansenadded Class method Seq.new_bp to seq.rb
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2011-10-13 martinahansenadded to_fastq method seq.rb
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2011-10-12 martinahansenadding tests for write_fastq_files
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2011-10-12 martinahansenadded write_fastq_files
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2011-10-12 martinahansenadded crufty puts method to fastq.rb
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2011-10-12 martinahansenvariable rename
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2011-10-12 martinahansenevil sort fix needed for assert_no_diff_dir
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2011-10-12 martinahansenfixed .svn dir issue with assert_no_diff_dir
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2011-10-12 martinahansenadded tests for write_fasta_files
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2011-10-12 martinahansenfortified test.sh
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2011-10-12 martinahansenfortified assert_no_diff_dir function
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2011-10-12 martinahansenadded assert_no_diff_dir function to test code
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2011-10-12 martinahansenadded biopieces write_fasta_files
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2011-10-06 martinahansenfixed alignment descriptors in sam.rb
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2011-10-05 martinahansencleanup
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2011-10-05 martinahansencleanup
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2011-09-29 martinahansenadded delimiter to join_seq
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2011-09-26 martinahansenfixed bug in patscan_seq arguments
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2011-09-23 martinahansenfixed patscan_seq
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2011-09-23 martinahansenremoved bad method from fastq.rb
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2011-09-23 martinahansenfixed mistakes in test_fasta.rb
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2011-09-23 martinahansenfixed newline to rec seperator in seq.rb
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2011-09-20 martinahansenupdated patscan_seq
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2011-09-19 martinahansenfixed grave bug in genbank.rb
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2011-09-07 martinahansenCholhee fixed bug in lowercase_seq
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2011-09-06 martinahansenfixed typo in test_biopieces.rb
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2011-09-06 martinahansenrewrote remove_mids again
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2011-09-06 martinahansenfixed bug in remove_mids
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2011-09-06 martinahansenadded tests to remove_mids
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2011-09-05 martinahansenupdated remove_mids
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2011-09-05 martinahansenadded hamming_distance method to seq.rb
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2011-09-05 martinahansenpolishing on sam.rb
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2011-09-05 martinahansenspeedup of bits.rb
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2011-09-05 martinahansenspeedup of bits.rb
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2011-09-05 martinahansenpolished test_cigar.rb
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2011-09-01 martinahansenfixed bug in find_SNPs
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2011-09-01 martinahansenadded tests for find_SNPs
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2011-09-01 martinahansenadded find_SNPs biopiece
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2011-09-01 martinahansenpolish of cigar.rb
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2011-08-31 martinahansencorrected bug in sam.rb
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2011-08-31 martinahansensam update
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2011-08-31 martinahansenworked on sam - added 1 to phred score check in seq.rb
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2011-08-29 martinahansenadded cigar.rb and test_cigar.rb
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2011-08-29 martinahansenworking on sam.rb
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2011-08-24 martinahansenworked on unit tests for sam.rb
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2011-08-24 martinahansenworked on unit tests for sam.rb
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2011-08-24 martinahansenworked on unit tests for sam.rb
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2011-08-24 martinahansenworked on unit tests for sam.rb
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2011-08-24 martinahansenworked on unit tests for sam.rb
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2011-08-24 martinahansenworked on unit tests for sam.rb
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2011-08-23 martinahansenworked on unit tests for sam.rb
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2011-08-23 martinahansenworked on unit tests for sam.rb
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2011-08-23 martinahansenworked on unit tests for sam.rb
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2011-08-23 martinahansenworked on unit tests for sam.rb
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2011-08-23 martinahansenworked on unit tests for sam.rb
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2011-08-22 martinahansenworked on sam.rb
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2011-07-04 martinahansens/Checking/Testing
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2011-07-04 martinahansenfixed typo
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2011-07-04 martinahansenfixed typo
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2011-07-04 martinahansenfixed typo
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2011-07-03 martinahansenadded warnings to bp_test
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2011-07-03 martinahansenadded warnings to bp_test
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2011-06-17 martinahansenadded sam.rb to ruby trunk
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2011-06-17 martinahansenadded sam.rb to ruby trunk
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2011-06-15 martinahansenadded tests for rename_keys
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2011-06-15 martinahansenchanged testing log file name
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2011-06-15 martinahansenadded tests for blast_seq_pair
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2011-06-14 martinahansenhackery changes to plot_matches to deal with blast...
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2011-06-14 martinahansenblast_seq_pair polish
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2011-06-14 martinahansenblast_seq_pair polish
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2011-06-14 martinahansenblast_seq_pair polish
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2011-06-14 martinahansenadded blast_seq_pair
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2011-06-13 martinahansenadded Seq.type_guess to ruby code
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2011-06-08 martinahansenadded tests for remove_keys
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2011-06-08 martinahansenadded tests for remove_indels
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2011-06-08 martinahansenadded tests for reverse_seq
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2011-06-08 martinahansenadded tests for complement_seq
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2011-06-06 martinahansenfixed cat_seq
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2011-06-06 martinahansenadded cat_seq biopiece
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2011-06-05 martinahansenshortened messages in test suite
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2011-06-05 martinahansenadded tests for uniq_vals
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