smoothed ruby code to get rid of warnings

git-svn-id: http://biopieces.googlecode.com/svn/trunk@1561 74ccb610-7750-0410-82ae-013aeee3265d

diff --git a/code_ruby/lib/maasha/filesys.rb b/code_ruby/lib/maasha/filesys.rb
index b3b450a9aefd653a53f8d80a9647a2e231f372c5..00530d655720eaa7e82f51f6ece33353527ae8d8 100644 (file)
--- a/code_ruby/lib/maasha/filesys.rb
+++ b/code_ruby/lib/maasha/filesys.rb
@@ -84,8 +84,8 @@ class Filesys
   end
 
   # Method to puts directoy on Filesys objects.
-  def puts *args
-    @io.puts *args
+  def puts(*args)
+    @io.puts(*args)
   end
 
   private

diff --git a/code_ruby/lib/maasha/seq.rb b/code_ruby/lib/maasha/seq.rb
index 2919cfcba21d1c035d9e03d88b75780f0f30204d..9eb4fbf76538273897cf65bf9657df6a47794b01 100644 (file)
--- a/code_ruby/lib/maasha/seq.rb
+++ b/code_ruby/lib/maasha/seq.rb
@@ -179,8 +179,8 @@ class Seq
     raise SeqError, "Missing seq_name" if self.seq_name.nil?
     raise SeqError, "Missing seq"      if self.seq.nil?
 
-    seq_name = self.seq_name
-    seq      = self.seq
+    seq_name = self.seq_name.to_s
+    seq      = self.seq.to_s
 
     unless wrap.nil?
       seq.gsub!(/(.{#{wrap}})/) do |match|
@@ -199,9 +199,9 @@ class Seq
     raise SeqError, "Missing seq"      if self.seq.nil?
     raise SeqError, "Missing qual"     if self.qual.nil?
 
-    seq_name = self.seq_name
-    seq      = self.seq
-    qual     = self.qual
+    seq_name = self.seq_name.to_s
+    seq      = self.seq.to_s
+    qual     = self.qual.to_s
 
     "@" + seq_name + $/ + seq + $/ + "+" + $/ + qual + $/
   end