| 2012-03-09 |
Heng Li | Removed SVN ChangeLog; merged my private github Log...
|
commit | commitdiff | tree |
| 2012-03-09 |
Heng Li | doc for downsampling
|
commit | commitdiff | tree |
| 2012-03-09 |
Heng Li | another example, used by g1k for QA
|
commit | commitdiff | tree |
| 2012-03-09 |
Heng Li | Two auxilary Lua scripts
|
commit | commitdiff | tree |
| 2012-03-09 |
Heng Li | Incoporated changes from Nils Homer.
|
commit | commitdiff | tree |
| 2012-02-16 |
Heng Li | bugfix: wrong SP; missing DV in the VCF header
|
commit | commitdiff | tree |
| 2012-02-08 |
Heng Li | changes from git
|
commit | commitdiff | tree |
| 2011-09-28 |
Heng Li | unpadded output
|
commit | commitdiff | tree |
| 2011-09-23 |
Heng Li | added the ace2sam converter
|
commit | commitdiff | tree |
| 2011-09-23 |
Heng Li | converted padded SAM to unpadded SAM
|
commit | commitdiff | tree |
| 2011-09-02 |
Heng Li | * Updated samtools to the latest
|
commit | commitdiff | tree |
| 2011-08-17 |
Heng Li | * bugfix in index: large memory when a read pos is 1
|
commit | commitdiff | tree |
| 2011-07-15 |
Heng Li | allow to set seed in view-subsampling
|
commit | commitdiff | tree |
| 2011-07-15 |
Heng Li | subsampling read pairs
|
commit | commitdiff | tree |
| 2011-07-13 |
Heng Li | support trio indels
|
commit | commitdiff | tree |
| 2011-07-07 |
Heng Li | for WIN32 compatibility
|
commit | commitdiff | tree |
| 2011-07-07 |
Heng Li | fixed a bug in bam_plcmd.c
|
commit | commitdiff | tree |
| 2011-07-07 |
Heng Li | Release samtools-0.1.17
|
commit | commitdiff | tree |
| 2011-06-15 |
Heng Li | fixed a bug caused by a recent patch
|
commit | commitdiff | tree |
| 2011-06-03 |
Heng Li | * 0.1.16-dev (r969:252)
|
commit | commitdiff | tree |
| 2011-04-22 |
Heng Li | Removed the pileup command
|
commit | commitdiff | tree |
| 2011-04-22 |
Heng Li | Release samtools-0.1.16 (r963:234)
|
commit | commitdiff | tree |
| 2011-04-21 |
Heng Li | fixed a bug in merge
|
commit | commitdiff | tree |
| 2011-04-18 |
Heng Li | Added the support for the new SAM/BAM type "B"
|
commit | commitdiff | tree |
| 2011-04-17 |
Heng Li | * fixed a bug in bedidx: input BED not sorted
|
commit | commitdiff | tree |
| 2011-04-15 |
Heng Li | * Added Brent's method for frequency estimate
|
commit | commitdiff | tree |
| 2011-04-10 |
Heng Li | Release samtools-0.1.15 (r949:203)
|
commit | commitdiff | tree |
| 2011-04-08 |
Heng Li | * added bam_verbose global variable
|
commit | commitdiff | tree |
| 2011-04-01 |
Heng Li | added quality filtering
|
commit | commitdiff | tree |
| 2011-04-01 |
Heng Li | fixed a few typos in comments
|
commit | commitdiff | tree |
| 2011-04-01 |
Heng Li | Added an example of using mpileup
|
commit | commitdiff | tree |
| 2011-03-31 |
Heng Li | * synchronize bgzf in tabix and in samtools
|
commit | commitdiff | tree |
| 2011-03-30 |
Heng Li | * added BED support to samtools view and mpileup and...
|
commit | commitdiff | tree |
| 2011-03-22 |
Heng Li | Release samtools-0.1.14 (r933:170)
|
commit | commitdiff | tree |
| 2011-03-18 |
Heng Li | forget to add this file
|
commit | commitdiff | tree |
| 2011-03-18 |
Heng Li | * allow to change the compression level in BAM output
|
commit | commitdiff | tree |
| 2011-03-18 |
Heng Li | export2sam.pl-2.3.1, provided by Chris Saunders from...
|
commit | commitdiff | tree |
| 2011-03-08 |
Heng Li | added the haploid mode
|
commit | commitdiff | tree |
| 2011-03-01 |
Heng Li | Release samtools-0.1.13 (r926:134)
|
commit | commitdiff | tree |
| 2011-03-01 |
Heng Li | * optionally drop phase ambiguous reads
|
commit | commitdiff | tree |
| 2011-02-28 |
Heng Li | minor changes to a heuristic rule
|
commit | commitdiff | tree |
| 2011-02-28 |
Heng Li | * 0.1.12-r924:126
|
commit | commitdiff | tree |
| 2011-02-28 |
Heng Li | * put version number in bam.h
|
commit | commitdiff | tree |
| 2011-02-25 |
Heng Li | * change the order of PL/GL according to the latest...
|
commit | commitdiff | tree |
| 2011-02-25 |
Heng Li | update the BCF spec
|
commit | commitdiff | tree |
| 2011-02-25 |
Heng Li | added the phase command
|
commit | commitdiff | tree |
| 2011-02-24 |
Heng Li | added "const" to bcf_p1_cal()
|
commit | commitdiff | tree |
| 2011-02-24 |
Heng Li | more meaningful BAM truncation message
|
commit | commitdiff | tree |
| 2011-02-24 |
Heng Li | * automatically fix errors in GL
|
commit | commitdiff | tree |
| 2011-02-11 |
Heng Li | finished VCF->BCF conversion
|
commit | commitdiff | tree |
| 2011-02-02 |
Heng Li | fixed a typo in the VCF header
|
commit | commitdiff | tree |
| 2011-02-02 |
Heng Li | * fixed an out-of-boundary bug
|
commit | commitdiff | tree |
| 2011-01-30 |
Heng Li | * avoid a segfault when network connect fails
|
commit | commitdiff | tree |
| 2011-01-27 |
Heng Li | * fixed a rare memory issue in bam_md.c
|
commit | commitdiff | tree |
| 2011-01-24 |
Heng Li | fixed two minor bugs in Fisher's exact test
|
commit | commitdiff | tree |
| 2011-01-15 |
Heng Li | move bam_nt16_nt4_table[] from bam_maqcns.c to bam_md.c
|
commit | commitdiff | tree |
| 2011-01-06 |
Heng Li | * samtools-0.1.12-10 (r896)
|
commit | commitdiff | tree |
| 2011-01-04 |
Heng Li | sorry. It is SP not ST
|
commit | commitdiff | tree |
| 2011-01-04 |
Heng Li | added ST
|
commit | commitdiff | tree |
| 2010-12-21 |
Heng Li | * samtools-0.1.12-9 (r891)
|
commit | commitdiff | tree |
| 2010-12-15 |
Heng Li | * samtools-0.1.12-12 (r889)
|
commit | commitdiff | tree |
| 2010-12-15 |
Heng Li | When -B is applied to mpileup, still use paired reads...
|
commit | commitdiff | tree |
| 2010-12-15 |
Heng Li | * samtools-0.1.12-6 (r887)
|
commit | commitdiff | tree |
| 2010-12-14 |
Heng Li | (Arguably) improved the indel caller a tiny bit for...
|
commit | commitdiff | tree |
| 2010-12-13 |
Heng Li | * samtools-0.1.12-4 (r884)
|
commit | commitdiff | tree |
| 2010-12-12 |
Heng Li | compute max SP and max GQ from sample genotypes
|
commit | commitdiff | tree |
| 2010-12-10 |
Heng Li | drop bcf-fix.pl as it is redundant by the latest changes
|
commit | commitdiff | tree |
| 2010-12-10 |
Heng Li | * fixed a minor issue in printing VCFs
|
commit | commitdiff | tree |
| 2010-12-10 |
Heng Li | Make sure that the GT genotype field is the first
|
commit | commitdiff | tree |
| 2010-12-08 |
Heng Li | * samtools-0.1.12-2 (r877)
|
commit | commitdiff | tree |
| 2010-12-08 |
Heng Li | a spelling error..
|
commit | commitdiff | tree |
| 2010-12-08 |
Heng Li | * samtools-0.1.12-1 (r873)
|
commit | commitdiff | tree |
| 2010-12-07 |
Heng Li | fixed a bug in vcf2fq
|
commit | commitdiff | tree |
| 2010-12-05 |
Heng Li | added a warning for the Windows version
|
commit | commitdiff | tree |
| 2010-12-05 |
Heng Li | In ksprintf(), change "%lf" and "%lg" to "%f" and ...
|
commit | commitdiff | tree |
| 2010-12-05 |
Heng Li | bring back the windows support
|
commit | commitdiff | tree |
| 2010-12-05 |
Heng Li | Fixed a compiling error when knetfile is not used.
|
commit | commitdiff | tree |
| 2010-12-04 |
Heng Li | vcf->fastq
|
commit | commitdiff | tree |
| 2010-12-03 |
Heng Li | * remove "-f". Instead always compute consensus quality
|
commit | commitdiff | tree |
| 2010-12-03 |
Heng Li | more informative error message
|
commit | commitdiff | tree |
| 2010-12-02 |
Heng Li | Release samtools-0.1.12a
|
commit | commitdiff | tree |
| 2010-12-02 |
Heng Li | a possible fix to DP4=0,0,0,0; have not tested, but...
|
commit | commitdiff | tree |
| 2010-12-02 |
Heng Li | Release samtools-0.1.12
|
commit | commitdiff | tree |
| 2010-12-02 |
Heng Li | * samtools-0.1.11-1 (r858)
|
commit | commitdiff | tree |
| 2010-12-01 |
Heng Li | fixed a memory leak in bam_fetch()
|
commit | commitdiff | tree |
| 2010-11-26 |
Heng Li | * fixed a memory violation
|
commit | commitdiff | tree |
| 2010-11-23 |
Heng Li | fixed a typo/bug in r^2 computation
|
commit | commitdiff | tree |
| 2010-11-22 |
Heng Li | forget to change the version information
|
commit | commitdiff | tree |
| 2010-11-22 |
Heng Li | Release samtools-0.1.11
|
commit | commitdiff | tree |
| 2010-11-20 |
Heng Li | * samtools-0.1.10-9 (r844)
|
commit | commitdiff | tree |
| 2010-11-20 |
Heng Li | In merging, if -R is specified, do not abort if the...
|
commit | commitdiff | tree |
| 2010-11-19 |
Heng Li | * samtools-0.1.10 (r841)
|
commit | commitdiff | tree |
| 2010-11-19 |
Heng Li | * samtools-0.1.10-4 (r840)
|
commit | commitdiff | tree |
| 2010-11-18 |
Heng Li | * samtools-0.1.10-6 (r839)
|
commit | commitdiff | tree |
| 2010-11-18 |
Heng Li | Apply a patch by Rob Davis, which improves fault detection.
|
commit | commitdiff | tree |
| 2010-11-18 |
Heng Li | * samtools-r836
|
commit | commitdiff | tree |
| 2010-11-18 |
Heng Li | * modify the filtering rule: also filter SNPs around...
|
commit | commitdiff | tree |
| 2010-11-18 |
Heng Li | * samtools-0.1.10-4 (r834)
|
commit | commitdiff | tree |
| 2010-11-18 |
Heng Li | fixed a bug in printing MNPs
|
commit | commitdiff | tree |
| 2010-11-18 |
Heng Li | minor change to how seqQ is applied
|
commit | commitdiff | tree |
| next |
projects / samtools.git / search