]> git.donarmstrong.com Git - samtools.git/commitdiff
fixed a bug in printing MNPs
authorHeng Li <lh3@live.co.uk>
Thu, 18 Nov 2010 02:58:58 +0000 (02:58 +0000)
committerHeng Li <lh3@live.co.uk>
Thu, 18 Nov 2010 02:58:58 +0000 (02:58 +0000)
bam2bcf.c
bamtk.c

index fe447e6aafb610fb984d3e07c9c507a5572630ca..de414d7176903dd323ced99f3b8de39396667517 100644 (file)
--- a/bam2bcf.c
+++ b/bam2bcf.c
@@ -209,7 +209,7 @@ int bcf_call2bcf(int tid, int pos, bcf_call_t *bc, bcf1_t *b, bcf_callret1_t *bc
                }
                kputc('\0', &s);
        } else if (bc->ori_ref == B2B_REF_MNP) {
-               for (j = 0; j < bca->indelreg; ++j) kputc(ref[pos+1+j], &s);
+               for (j = 0; j < bca->indelreg; ++j) kputc(ref[pos+j], &s);
                kputc('\0', &s);
                for (i = 1; i < 4; ++i) {
                        if (bc->a[i] < 0) break;
diff --git a/bamtk.c b/bamtk.c
index 591257b9c7c119f51267bdbcdeda8ff96865a590..89f7e80d8b12cf26fb4d450eb5f695c1ab2bb242 100644 (file)
--- a/bamtk.c
+++ b/bamtk.c
@@ -9,7 +9,7 @@
 #endif
 
 #ifndef PACKAGE_VERSION
-#define PACKAGE_VERSION "0.1.10-2 (r832)"
+#define PACKAGE_VERSION "0.1.10-3 (r833)"
 #endif
 
 int bam_taf2baf(int argc, char *argv[]);