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mothur.git
2010-12-31 pschlossadded shhh.seqs command commit | commitdiff | tree | snapshot
2010-12-23 pschlossaddition of trim.flows commit | commitdiff | tree | snapshot
2010-12-23 westcottfixed memory leak in maligner minCoverageFilter functio... commit | commitdiff | tree | snapshot
2010-12-23 westcottfixed memory leak in decalc findClosest function used... commit | commitdiff | tree | snapshot
2010-12-22 westcottchimera.slayer fix commit | commitdiff | tree | snapshot
2010-12-22 westcottfixed trim.seqs weird characters thing commit | commitdiff | tree | snapshot
2010-12-22 westcottadded output filenames and m->control_pressed stuff... commit | commitdiff | tree | snapshot
2010-12-21 pschlossmore changes to error.seqs command and quality scores... commit | commitdiff | tree | snapshot
2010-12-20 pschlosspat's changes to seq.error command commit | commitdiff | tree | snapshot
2010-12-17 westcottadded design parameter to the indicator command commit | commitdiff | tree | snapshot
2010-12-17 westcottadded odum, canberra, structchi2, structchord, structe... commit | commitdiff | tree | snapshot
2010-12-17 westcottfixed bug with trim.seqs- when a file is blank for... commit | commitdiff | tree | snapshot
2010-12-14 westcottadded confidence scores to get.lineage and remove.lineage commit | commitdiff | tree | snapshot
2010-12-13 westcottadded summary file to classify.otu commit | commitdiff | tree | snapshot
2010-12-13 westcottclassify.seqs summary file fix commit | commitdiff | tree | snapshot
2010-12-10 westcottrolled back metastats workspace change commit | commitdiff | tree | snapshot
2010-12-10 westcottadded shared file to catchall command commit | commitdiff | tree | snapshot
2010-12-08 westcottmetastats double* to double fix for windows commit | commitdiff | tree | snapshot
2010-12-08 westcottconsensus.seqs summary file change commit | commitdiff | tree | snapshot
2010-12-08 westcottget.oturep ifstream commit | commitdiff | tree | snapshot
2010-12-08 westcottget.oturep change and trim.seqs fix commit | commitdiff | tree | snapshot
2010-12-08 westcottcatchall windows fix commit | commitdiff | tree | snapshot
2010-12-07 westcottconsensus.seqs can now find a consensus on a whole... commit | commitdiff | tree | snapshot
2010-12-07 pschlosschanges to seqerrorcommand commit | commitdiff | tree | snapshot
2010-12-07 westcottfixed indicator grouping problem commit | commitdiff | tree | snapshot
2010-12-06 westcottmodified trim.seqs to speed up the append with multiple... commit | commitdiff | tree | snapshot
2010-12-06 westcottadded summary output to catchall command commit | commitdiff | tree | snapshot
2010-12-03 westcottfixed indicator command bug commit | commitdiff | tree | snapshot
2010-12-03 westcottfixed craig nelsons weighted bug and paralellized parsimony commit | commitdiff | tree | snapshot
2010-11-29 westcottadded consensus.seqs command commit | commitdiff | tree | snapshot
2010-11-22 westcottfinished wrapper for catchall commit | commitdiff | tree | snapshot
2010-11-22 westcottadded group option to trim.seqs so you can provide... commit | commitdiff | tree | snapshot
2010-11-19 westcottadded indicator command commit | commitdiff | tree | snapshot
2010-11-12 westcottadded get.otus and remove.otus commands commit | commitdiff | tree | snapshot
2010-11-10 westcottadded get.groups and remove.groups commands commit | commitdiff | tree | snapshot
2010-11-10 westcottfinished sub.sample command commit | commitdiff | tree | snapshot
2010-11-09 westcottparsimony calculator changed order of groups to reflect... commit | commitdiff | tree | snapshot
2010-11-08 westcottchanges to dist.seqs and pairwise.seqs and cluster... commit | commitdiff | tree | snapshot
2010-11-08 westcottfixed cluster.split bug commit | commitdiff | tree | snapshot
2010-11-08 westcottcluster.split fix commit | commitdiff | tree | snapshot
2010-11-05 westcottfixed metastats, added resize to cluster.classic, added... commit | commitdiff | tree | snapshot
2010-11-05 westcottcluster.split fix commit | commitdiff | tree | snapshot
2010-11-02 westcottchanged cluster.classic so that it does not adjust... commit | commitdiff | tree | snapshot
2010-11-02 westcottfixed bug with normalize.shared, printed out numbins... commit | commitdiff | tree | snapshot
2010-11-02 westcottfixed cluster.classic and added weighted method to... commit | commitdiff | tree | snapshot
2010-10-29 westcottadded cluster.classic command commit | commitdiff | tree | snapshot
2010-10-29 westcottadded cluster.classic command commit | commitdiff | tree | snapshot
2010-10-27 westcottfixed helps commit | commitdiff | tree | snapshot
2010-10-27 westcottfixing helps commit | commitdiff | tree | snapshot
2010-10-26 westcottdone testing 1.14.0 commit | commitdiff | tree | snapshot
2010-10-26 westcottdone testing 1.14.0 commit | commitdiff | tree | snapshot
2010-10-26 westcottfixes while testing commit | commitdiff | tree | snapshot
2010-10-25 westcottadded remove file option to pipeline command in user... commit | commitdiff | tree | snapshot
2010-10-25 westcotttesting 1.14.0 commit | commitdiff | tree | snapshot
2010-10-25 westcotttesting 1.14.0 commit | commitdiff | tree | snapshot
2010-10-20 westcottadded pairwise.seqs commit | commitdiff | tree | snapshot
2010-10-19 westcottfixed bug with aligner and longest base. added deunique... commit | commitdiff | tree | snapshot
2010-10-19 westcottfixed phylo.diversity and made trim.seqs with allfiles... commit | commitdiff | tree | snapshot
2010-10-18 westcottfixed unifrac.weighted commit | commitdiff | tree | snapshot
2010-10-18 westcottfixed unifrac.unweighted commit | commitdiff | tree | snapshot
2010-10-18 westcottadded ifdefs for extern c commit | commitdiff | tree | snapshot
2010-10-18 westcotttesting metastats compile commit | commitdiff | tree | snapshot
2010-10-15 westcottadded pipeline commands which involved change to comman... commit | commitdiff | tree | snapshot
2010-10-05 westcottparalellized phylo.diversity commit | commitdiff | tree | snapshot
2010-10-04 westcottparalellized rarefaction.single commit | commitdiff | tree | snapshot
2010-10-04 westcottchanged name of parse.fastaq command to fastq.info commit | commitdiff | tree | snapshot
2010-09-30 westcottadded parse.fastaq command, added permute option to... commit | commitdiff | tree | snapshot
2010-09-28 westcottadded distance option to summary.shared commit | commitdiff | tree | snapshot
2010-09-24 westcottadded get.lineage and remove.lineage commands commit | commitdiff | tree | snapshot
2010-09-23 westcottfixed order of unifrac commands so that it matches... commit | commitdiff | tree | snapshot
2010-09-23 westcottadded cluster.fragments command as well as the nseqs... commit | commitdiff | tree | snapshot
2010-09-21 westcottadded mothur executable to cvs commit | commitdiff | tree | snapshot
2010-09-21 westcottadded split.groups command commit | commitdiff | tree | snapshot
2010-09-20 westcottchanged how we name the make.group groups file, and... commit | commitdiff | tree | snapshot
2010-09-17 westcottbug fixes commit | commitdiff | tree | snapshot
2010-09-17 westcottbug fixes commit | commitdiff | tree | snapshot
2010-09-17 westcottworking on megastats commit | commitdiff | tree | snapshot
2010-09-16 westcottinitial add of metastats commit | commitdiff | tree | snapshot
2010-09-15 westcottadded normalize.shared command commit | commitdiff | tree | snapshot
2010-09-15 westcottadded normalize.shared command commit | commitdiff | tree | snapshot
2010-09-15 westcottparalellized summary.shared commit | commitdiff | tree | snapshot
2010-09-09 westcottdone testing 1.13.0 commit | commitdiff | tree | snapshot
2010-09-08 westcotttesting 1.13.0 commit | commitdiff | tree | snapshot
2010-09-04 westcottworking on testing for 1.13 commit | commitdiff | tree | snapshot
2010-09-03 westcottworking on testing commit | commitdiff | tree | snapshot
2010-09-01 westcottunifrac parallelization done, changed dist.seqs output... commit | commitdiff | tree | snapshot
2010-09-01 westcottworking on unifrac parallelization commit | commitdiff | tree | snapshot
2010-08-31 westcottworking on parallelizing unifrac.unweighted. commit | commitdiff | tree | snapshot
2010-08-31 westcottworking on parallelizing unifrac.weighted. commit | commitdiff | tree | snapshot
2010-08-30 westcottsped up unifrac unweighted. commit | commitdiff | tree | snapshot
2010-08-30 westcottsped up unifrac weighted. commit | commitdiff | tree | snapshot
2010-08-27 westcottmade read.tree not require a groupfile, if one is not... commit | commitdiff | tree | snapshot
2010-08-27 westcottfixed phylo.diversity commit | commitdiff | tree | snapshot
2010-08-27 westcottfixed phylo.diversity commit | commitdiff | tree | snapshot
2010-08-26 pschlosschanges to read.tree commit | commitdiff | tree | snapshot
2010-08-26 pschlossmodified splitAtComma in mothurout command commit | commitdiff | tree | snapshot
2010-08-26 westcottadded clearcut source to mothur, fixed mislabeled share... commit | commitdiff | tree | snapshot
2010-08-26 westcottadded clearcut source to mothur, fixed mislabeled share... commit | commitdiff | tree | snapshot
2010-08-26 pschlosschanges to read.otu(list/shared) - took out substr... commit | commitdiff | tree | snapshot
2010-08-26 pschlosstook out debugging output code from distance calculators commit | commitdiff | tree | snapshot
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Mothur--16S microbiota sequencing software; mirror of main repository with my branches