added cluster.classic command

diff --git a/clusterdoturcommand.cpp b/clusterdoturcommand.cpp
index 1c0c78d274359b7156506f6697e0aa039754a38d..f403aa733673ed6737d64ed0d69a759dd57d9e4c 100644 (file)
--- a/clusterdoturcommand.cpp
+++ b/clusterdoturcommand.cpp
@@ -13,7 +13,7 @@
 //**********************************************************************************************************************
 vector<string> ClusterDoturCommand::getValidParameters(){      
        try {
-               string AlignArray[] =  {"phylip","cutoff","precision","method","outputdir","inputdir"};
+               string AlignArray[] =  {"phylip","name","hard","cutoff","precision","method","outputdir","inputdir"};
                vector<string> myArray (AlignArray, AlignArray+(sizeof(AlignArray)/sizeof(string)));
                return myArray;
        }
@@ -72,7 +72,7 @@ ClusterDoturCommand::ClusterDoturCommand(string option)  {
                
                else {
                        //valid paramters for this command
-                       string Array[] =  {"phylip","cutoff","precision","method","outputdir","inputdir"};
+                       string Array[] =  {"phylip","name","cutoff","hard","precision","method","outputdir","inputdir"};
                        vector<string> myArray (Array, Array+(sizeof(Array)/sizeof(string)));
                        
                        OptionParser parser(option);

diff --git a/mothur b/mothur
index dfb46e652663bde20b1e7e22471e0a183df5e165..ba4b3d61932c81fa80f9caacdb567991119247ea 100755 (executable)
Binary files a/mothur and b/mothur differ