git.donarmstrong.com Git - mothur.git/shortlog

]> git.donarmstrong.com Git - mothur.git/shortlog

2012-06-07	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-06-07	Pat Schloss	dunno	commit \| commitdiff \| tree \| snapshot
2012-06-05	Sarah Westcott	added forward and reverse barcodes to trim.seqs to...	commit \| commitdiff \| tree \| snapshot
2012-06-04	Sarah Westcott	fixed classify.seqs output file name - had issue if...	commit \| commitdiff \| tree \| snapshot
2012-06-04	Sarah Westcott	added check to make sure shhh.flows child processes...	commit \| commitdiff \| tree \| snapshot
2012-05-31	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-05-31	Pat Schloss	change to .gitignore	commit \| commitdiff \| tree \| snapshot
2012-05-29	Sarah Westcott	added code to check path for uchime and catchall execut...	commit \| commitdiff \| tree \| snapshot
2012-05-24	Sarah Westcott	forced rarefaction.single to output ending line for...	commit \| commitdiff \| tree \| snapshot
2012-05-24	Sarah Westcott	fixed bug in sffinfo when ~ was used in the sff filenam...	commit \| commitdiff \| tree \| snapshot
2012-05-23	Sarah Westcott	added metadata parameter to otu.association	commit \| commitdiff \| tree \| snapshot
2012-05-23	Sarah Westcott	added design and sets parameters to the rarefaction...	commit \| commitdiff \| tree \| snapshot
2012-05-22	Sarah Westcott	added debug output classify.seqs. worked on make.contig...	commit \| commitdiff \| tree \| snapshot
2012-05-21	Sarah Westcott	added get.otulabels and remove.otulabels commands per...	commit \| commitdiff \| tree \| snapshot
2012-05-18	Sarah Westcott	added threshold parameter to make.contigs command.	commit \| commitdiff \| tree \| snapshot
2012-05-18	Sarah Westcott	Merge remote-tracking branch 'origin/master'	commit \| commitdiff \| tree \| snapshot
2012-05-18	Sarah Westcott	added check to cluster.classic to make sure file type...	commit \| commitdiff \| tree \| snapshot
2012-05-16	Kathryn Iverson	added check for numOTUS, will skip if < 2.	commit \| commitdiff \| tree \| snapshot
2012-05-16	Kathryn Iverson	Merge branch 'master' of https://github.com/mothur...	commit \| commitdiff \| tree \| snapshot
2012-05-16	Kathryn Iverson	updated output to include standard deviation	commit \| commitdiff \| tree \| snapshot
2012-05-16	Kathryn Iverson	replaced p-value with zscore for lookup in ztable.	commit \| commitdiff \| tree \| snapshot
2012-05-16	Sarah Westcott	added classic parameter to cluster.split. working...	commit \| commitdiff \| tree \| snapshot
2012-05-15	Kathryn Iverson	added functions to calculate standard deviation and...	commit \| commitdiff \| tree \| snapshot
2012-05-15	Sarah Westcott	added list.labels command. started work on make.contigs...	commit \| commitdiff \| tree \| snapshot
2012-05-14	Sarah Westcott	last checkin for 1.25.1	commit \| commitdiff \| tree \| snapshot
2012-05-14	Sarah Westcott	fixed bug in make.biom that occurred if some taxonomies...	commit \| commitdiff \| tree \| snapshot
2012-05-14	Sarah Westcott	Merge remote-tracking branch 'origin/master'	commit \| commitdiff \| tree \| snapshot
2012-05-14	Sarah Westcott	added debug info to engines function to get mother...	commit \| commitdiff \| tree \| snapshot
2012-05-14	John Westcott	trying to clean up project files path issues	commit \| commitdiff \| tree \| snapshot
2012-05-14	Pat Schloss	fixing pbxproj	commit \| commitdiff \| tree \| snapshot
2012-05-14	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-05-14	Pat Schloss	small mods to sensspec command	commit \| commitdiff \| tree \| snapshot
2012-05-11	Sarah Westcott	added some debug stuff to chimera.uchime. optimized...	commit \| commitdiff \| tree \| snapshot
2012-05-11	Sarah Westcott	fixed path redirect issue in shhh.flows. optimized...	commit \| commitdiff \| tree \| snapshot
2012-05-10	Sarah Westcott	fixed typos	commit \| commitdiff \| tree \| snapshot
2012-05-10	Sarah Westcott	added abundance and sample parameters to get.coremicrob...	commit \| commitdiff \| tree \| snapshot
2012-05-09	Sarah Westcott	working on get.coremicrobiom	commit \| commitdiff \| tree \| snapshot
2012-05-09	John Westcott	Merge remote-tracking branch 'origin/master'	commit \| commitdiff \| tree \| snapshot
2012-05-09	John Westcott	added debug flag to mothurOut. added debug parameter...	commit \| commitdiff \| tree \| snapshot
2012-05-09	Sarah Westcott	cluster.split split method defaults to classify if...	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	fixed segfault in unifrac with subsample. in progress...	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	Revert to previous commit	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	fixing	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	moving source to source folder	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	moved mothur's source into a folder to make grabbing...	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	removing chime source files from mother project.	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	another test	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	test2	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	test commit	commit \| commitdiff \| tree \| snapshot
2012-05-01	John Westcott	commit test	commit \| commitdiff \| tree \| snapshot
2012-05-01	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-05-01	Pat Schloss	fix rarefaction.single	commit \| commitdiff \| tree \| snapshot
2012-05-01	Sarah Westcott	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-05-01	Sarah Westcott	bug in dist.shared and tree.shared with new subsampling...	commit \| commitdiff \| tree \| snapshot
2012-05-01	Kathryn Iverson	fixed sim9 and trial_swap	commit \| commitdiff \| tree \| snapshot
2012-05-01	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-05-01	Sarah Westcott	changes while testing	commit \| commitdiff \| tree \| snapshot
2012-05-01	Sarah Westcott	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-05-01	Sarah Westcott	fixed bug in rarefaction.single creating the groups...	commit \| commitdiff \| tree \| snapshot
2012-04-30	Kathryn Iverson	fixed sim4	commit \| commitdiff \| tree \| snapshot
2012-04-30	Kathryn Iverson	added else if (matrix == "sim2") { }	commit \| commitdiff \| tree \| snapshot
2012-04-30	Kathryn Iverson	changed sim2 to random_shuffle	commit \| commitdiff \| tree \| snapshot
2012-04-30	Kathryn Iverson	added a matrix "burn in" for sim9 so that the matrix...	commit \| commitdiff \| tree \| snapshot
2012-04-30	Kathryn Iverson	fixed rowtotal and columntotal	commit \| commitdiff \| tree \| snapshot
2012-04-30	Kathryn Iverson	removed initmatrix and replaced it with co_matrix....	commit \| commitdiff \| tree \| snapshot
2012-04-30	Sarah Westcott	changes while testing	commit \| commitdiff \| tree \| snapshot
2012-04-30	Sarah Westcott	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-04-30	Sarah Westcott	changes while testing	commit \| commitdiff \| tree \| snapshot
2012-04-30	Kathryn Iverson	re-wrote co-occurrence command	commit \| commitdiff \| tree \| snapshot
2012-04-27	Sarah Westcott	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-04-27	Sarah Westcott	changes while testing.	commit \| commitdiff \| tree \| snapshot
2012-04-27	Kathryn Iverson	commented out the update_row_col_totals command. Should...	commit \| commitdiff \| tree \| snapshot
2012-04-23	Sarah Westcott	bugs found while testing	commit \| commitdiff \| tree \| snapshot
2012-04-23	Sarah Westcott	added check for positive values in pairwise.seqs gap...	commit \| commitdiff \| tree \| snapshot
2012-04-20	Sarah Westcott	added uchime_src folder. added biom parameter to make...	commit \| commitdiff \| tree \| snapshot
2012-04-17	Sarah Westcott	added make.biom command	commit \| commitdiff \| tree \| snapshot
2012-04-16	Sarah Westcott	added subsample and consensus parameters to unifrac...	commit \| commitdiff \| tree \| snapshot
2012-04-13	Sarah Westcott	fixing out labels to match those in shared file. If...	commit \| commitdiff \| tree \| snapshot
2012-04-13	Sarah Westcott	added tree reader class to handle reading trees. Rewor...	commit \| commitdiff \| tree \| snapshot
2012-04-11	Sarah Westcott	fixed bug with windows version of trim.seqs when run...	commit \| commitdiff \| tree \| snapshot
2012-04-11	Sarah Westcott	added subsample and consensus parameters to unifrac...	commit \| commitdiff \| tree \| snapshot
2012-04-10	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-04-10	Pat Schloss	fixing outputdir bug in shhhercommand.cpp	commit \| commitdiff \| tree \| snapshot
2012-04-10	Pat Schloss	dunno	commit \| commitdiff \| tree \| snapshot
2012-04-10	Pat Schloss	mod .gitignore	commit \| commitdiff \| tree \| snapshot
2012-04-10	Pat Schloss	fixed shhh.flows outputdir bug	commit \| commitdiff \| tree \| snapshot
2012-04-05	Sarah Westcott	adding uchime source	commit \| commitdiff \| tree \| snapshot
2012-04-05	Sarah Westcott	deleted consensus command	commit \| commitdiff \| tree \| snapshot
2012-04-05	Sarah Westcott	added subsample, tiers and processors to tree.shared...	commit \| commitdiff \| tree \| snapshot
2012-04-04	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-04-04	Pat Schloss	Pat's fix	commit \| commitdiff \| tree \| snapshot
2012-04-04	Pat Schloss	Pat's testing	commit \| commitdiff \| tree \| snapshot
2012-04-03	Sarah Westcott	fixed bug in corr.axes so that it now uses the shared...	commit \| commitdiff \| tree \| snapshot
2012-04-03	Sarah Westcott	working on adding subsampling to dist.shared. fixed...	commit \| commitdiff \| tree \| snapshot
2012-04-02	Sarah Westcott	added create.database command. fixed help in get.shared...	commit \| commitdiff \| tree \| snapshot
2012-03-28	Sarah Westcott	mods to pcr.seqs	commit \| commitdiff \| tree \| snapshot
2012-03-28	Sarah Westcott	added keep dots to pcr.seqs. fixed pre.cluster name...	commit \| commitdiff \| tree \| snapshot
2012-03-28	Sarah Westcott	minor changes to pcr.seqs. Added filterToPos and filte...	commit \| commitdiff \| tree \| snapshot
2012-03-27	Sarah Westcott	initialized numLinkers and numSpacers in trim.seqs...	commit \| commitdiff \| tree \| snapshot
2012-03-27	Sarah Westcott	added pcr.seqs command. fixed bug in rarefacftion.singl...	commit \| commitdiff \| tree \| snapshot
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Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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