]> git.donarmstrong.com Git - mothur.git/commit
moving source to source folder
authorSarah Westcott <mothur.westcott@gmail.com>
Wed, 2 May 2012 15:39:37 +0000 (11:39 -0400)
committerSarah Westcott <mothur.westcott@gmail.com>
Wed, 2 May 2012 15:39:37 +0000 (11:39 -0400)
commitb9eb25970582d0a7676512e3722365c9e523c6cc
tree1b4380cc38f0307e3e8303be36fd4690d4278784
parent4a877efa127e56e81a21f53cfdbbfd3bfbe8c4ff
moving source to source folder
650 files changed:
source/ace.cpp [new file with mode: 0644]
source/ace.h [new file with mode: 0644]
source/aligncommand.cpp [new file with mode: 0644]
source/aligncommand.h [new file with mode: 0644]
source/alignment.cpp [new file with mode: 0644]
source/alignment.hpp [new file with mode: 0644]
source/alignmentcell.cpp [new file with mode: 0644]
source/alignmentcell.hpp [new file with mode: 0644]
source/alignmentdb.cpp [new file with mode: 0644]
source/alignmentdb.h [new file with mode: 0644]
source/amovacommand.cpp [new file with mode: 0644]
source/amovacommand.h [new file with mode: 0644]
source/anosimcommand.cpp [new file with mode: 0644]
source/anosimcommand.h [new file with mode: 0644]
source/averagelinkage.cpp [new file with mode: 0644]
source/bayesian.cpp [new file with mode: 0644]
source/bayesian.h [new file with mode: 0644]
source/bellerophon.cpp [new file with mode: 0644]
source/bellerophon.h [new file with mode: 0644]
source/bergerparker.cpp [new file with mode: 0644]
source/bergerparker.h [new file with mode: 0644]
source/binsequencecommand.cpp [new file with mode: 0644]
source/binsequencecommand.h [new file with mode: 0644]
source/blastalign.cpp [new file with mode: 0644]
source/blastalign.hpp [new file with mode: 0644]
source/blastdb.cpp [new file with mode: 0644]
source/blastdb.hpp [new file with mode: 0644]
source/boneh.cpp [new file with mode: 0644]
source/boneh.h [new file with mode: 0644]
source/bootstrap.cpp [new file with mode: 0644]
source/bootstrap.h [new file with mode: 0644]
source/bsplvb.f [new file with mode: 0644]
source/bsplvd.f [new file with mode: 0644]
source/bstick.cpp [new file with mode: 0644]
source/bstick.h [new file with mode: 0644]
source/bvalue.f [new file with mode: 0644]
source/calculator.cpp [new file with mode: 0644]
source/calculator.h [new file with mode: 0644]
source/canberra.cpp [new file with mode: 0644]
source/canberra.h [new file with mode: 0644]
source/catchallcommand.cpp [new file with mode: 0644]
source/catchallcommand.h [new file with mode: 0644]
source/ccode.cpp [new file with mode: 0644]
source/ccode.h [new file with mode: 0644]
source/chao1.cpp [new file with mode: 0644]
source/chao1.h [new file with mode: 0644]
source/chimera.cpp [new file with mode: 0644]
source/chimera.h [new file with mode: 0644]
source/chimerabellerophoncommand.cpp [new file with mode: 0644]
source/chimerabellerophoncommand.h [new file with mode: 0644]
source/chimeraccodecommand.cpp [new file with mode: 0644]
source/chimeraccodecommand.h [new file with mode: 0644]
source/chimeracheckcommand.cpp [new file with mode: 0644]
source/chimeracheckcommand.h [new file with mode: 0644]
source/chimeracheckrdp.cpp [new file with mode: 0644]
source/chimeracheckrdp.h [new file with mode: 0644]
source/chimeraperseuscommand.cpp [new file with mode: 0644]
source/chimeraperseuscommand.h [new file with mode: 0644]
source/chimerapintailcommand.cpp [new file with mode: 0644]
source/chimerapintailcommand.h [new file with mode: 0644]
source/chimerarealigner.cpp [new file with mode: 0644]
source/chimerarealigner.h [new file with mode: 0644]
source/chimeraslayer.cpp [new file with mode: 0644]
source/chimeraslayer.h [new file with mode: 0644]
source/chimeraslayercommand.cpp [new file with mode: 0644]
source/chimeraslayercommand.h [new file with mode: 0644]
source/chimerauchimecommand.cpp [new file with mode: 0644]
source/chimerauchimecommand.h [new file with mode: 0644]
source/chopseqscommand.cpp [new file with mode: 0644]
source/chopseqscommand.h [new file with mode: 0644]
source/classify.cpp [new file with mode: 0644]
source/classify.h [new file with mode: 0644]
source/classifyotucommand.cpp [new file with mode: 0644]
source/classifyotucommand.h [new file with mode: 0644]
source/classifyseqscommand.cpp [new file with mode: 0644]
source/classifyseqscommand.h [new file with mode: 0644]
source/classifytreecommand.cpp [new file with mode: 0644]
source/classifytreecommand.h [new file with mode: 0644]
source/clearcut.cpp [new file with mode: 0644]
source/clearcut.h [new file with mode: 0644]
source/clearcutcommand.cpp [new file with mode: 0644]
source/clearcutcommand.h [new file with mode: 0644]
source/clearmemorycommand.cpp [new file with mode: 0644]
source/clearmemorycommand.h [new file with mode: 0644]
source/cluster.cpp [new file with mode: 0644]
source/cluster.hpp [new file with mode: 0644]
source/clusterclassic.cpp [new file with mode: 0644]
source/clusterclassic.h [new file with mode: 0644]
source/clustercommand.cpp [new file with mode: 0644]
source/clustercommand.h [new file with mode: 0644]
source/clusterdoturcommand.cpp [new file with mode: 0644]
source/clusterdoturcommand.h [new file with mode: 0644]
source/clusterfragmentscommand.cpp [new file with mode: 0644]
source/clusterfragmentscommand.h [new file with mode: 0644]
source/clustersplitcommand.cpp [new file with mode: 0644]
source/clustersplitcommand.h [new file with mode: 0644]
source/cmdargs.cpp [new file with mode: 0644]
source/cmdargs.h [new file with mode: 0644]
source/collect.cpp [new file with mode: 0644]
source/collect.h [new file with mode: 0644]
source/collectcommand.cpp [new file with mode: 0644]
source/collectcommand.h [new file with mode: 0644]
source/collectdisplay.h [new file with mode: 0644]
source/collectorscurvedata.h [new file with mode: 0644]
source/collectsharedcommand.cpp [new file with mode: 0644]
source/collectsharedcommand.h [new file with mode: 0644]
source/command.hpp [new file with mode: 0644]
source/commandfactory.cpp [new file with mode: 0644]
source/commandfactory.hpp [new file with mode: 0644]
source/commandoptionparser.cpp [new file with mode: 0644]
source/commandoptionparser.hpp [new file with mode: 0644]
source/commandparameter.h [new file with mode: 0644]
source/common.h [new file with mode: 0644]
source/completelinkage.cpp [new file with mode: 0644]
source/consensus.cpp [new file with mode: 0644]
source/consensus.h [new file with mode: 0644]
source/consensusseqscommand.cpp [new file with mode: 0644]
source/consensusseqscommand.h [new file with mode: 0644]
source/cooccurrencecommand.cpp [new file with mode: 0644]
source/cooccurrencecommand.h [new file with mode: 0644]
source/corraxescommand.cpp [new file with mode: 0644]
source/corraxescommand.h [new file with mode: 0644]
source/countgroupscommand.cpp [new file with mode: 0644]
source/countgroupscommand.h [new file with mode: 0644]
source/countseqscommand.cpp [new file with mode: 0644]
source/countseqscommand.h [new file with mode: 0644]
source/coverage.cpp [new file with mode: 0644]
source/coverage.h [new file with mode: 0644]
source/createdatabasecommand.cpp [new file with mode: 0644]
source/createdatabasecommand.h [new file with mode: 0644]
source/currentfile.h [new file with mode: 0644]
source/database.cpp [new file with mode: 0644]
source/database.hpp [new file with mode: 0644]
source/datavector.hpp [new file with mode: 0644]
source/daxpy.f [new file with mode: 0644]
source/dayhoff.h [new file with mode: 0644]
source/ddot.f [new file with mode: 0644]
source/decalc.cpp [new file with mode: 0644]
source/decalc.h [new file with mode: 0644]
source/deconvolutecommand.cpp [new file with mode: 0644]
source/deconvolutecommand.h [new file with mode: 0644]
source/degapseqscommand.cpp [new file with mode: 0644]
source/degapseqscommand.h [new file with mode: 0644]
source/deuniqueseqscommand.cpp [new file with mode: 0644]
source/deuniqueseqscommand.h [new file with mode: 0644]
source/deuniquetreecommand.cpp [new file with mode: 0644]
source/deuniquetreecommand.h [new file with mode: 0644]
source/display.h [new file with mode: 0644]
source/dist.h [new file with mode: 0644]
source/distancecommand.cpp [new file with mode: 0644]
source/distancecommand.h [new file with mode: 0644]
source/distancedb.cpp [new file with mode: 0644]
source/distancedb.hpp [new file with mode: 0644]
source/distclearcut.cpp [new file with mode: 0644]
source/distclearcut.h [new file with mode: 0644]
source/dlibshuff.cpp [new file with mode: 0644]
source/dlibshuff.h [new file with mode: 0644]
source/dmat.cpp [new file with mode: 0644]
source/dmat.h [new file with mode: 0644]
source/dpbfa.f [new file with mode: 0644]
source/dpbsl.f [new file with mode: 0644]
source/eachgapdist.h [new file with mode: 0644]
source/eachgapdistignorens.h [new file with mode: 0644]
source/eachgapignore.h [new file with mode: 0644]
source/efron.cpp [new file with mode: 0644]
source/efron.h [new file with mode: 0644]
source/endiannessmacros.h [new file with mode: 0644]
source/engine.cpp [new file with mode: 0644]
source/engine.hpp [new file with mode: 0644]
source/fasta.cpp [new file with mode: 0644]
source/fasta.h [new file with mode: 0644]
source/fastamap.cpp [new file with mode: 0644]
source/fastamap.h [new file with mode: 0644]
source/fileoutput.cpp [new file with mode: 0644]
source/fileoutput.h [new file with mode: 0644]
source/filters.h [new file with mode: 0644]
source/filterseqscommand.cpp [new file with mode: 0644]
source/filterseqscommand.h [new file with mode: 0644]
source/flowdata.cpp [new file with mode: 0644]
source/flowdata.h [new file with mode: 0644]
source/formatcolumn.cpp [new file with mode: 0644]
source/formatcolumn.h [new file with mode: 0644]
source/formatmatrix.h [new file with mode: 0644]
source/formatphylip.cpp [new file with mode: 0644]
source/formatphylip.h [new file with mode: 0644]
source/fullmatrix.cpp [new file with mode: 0644]
source/fullmatrix.h [new file with mode: 0644]
source/geom.cpp [new file with mode: 0644]
source/geom.h [new file with mode: 0644]
source/getcommandinfocommand.cpp [new file with mode: 0644]
source/getcommandinfocommand.h [new file with mode: 0644]
source/getcurrentcommand.cpp [new file with mode: 0644]
source/getcurrentcommand.h [new file with mode: 0644]
source/getgroupcommand.cpp [new file with mode: 0644]
source/getgroupcommand.h [new file with mode: 0644]
source/getgroupscommand.cpp [new file with mode: 0644]
source/getgroupscommand.h [new file with mode: 0644]
source/getlabelcommand.cpp [new file with mode: 0644]
source/getlabelcommand.h [new file with mode: 0644]
source/getlineagecommand.cpp [new file with mode: 0644]
source/getlineagecommand.h [new file with mode: 0644]
source/getlistcountcommand.cpp [new file with mode: 0644]
source/getlistcountcommand.h [new file with mode: 0644]
source/getopt_long.cpp [new file with mode: 0644]
source/getopt_long.h [new file with mode: 0644]
source/getoturepcommand.cpp [new file with mode: 0644]
source/getoturepcommand.h [new file with mode: 0644]
source/getotuscommand.cpp [new file with mode: 0644]
source/getotuscommand.h [new file with mode: 0644]
source/getrabundcommand.cpp [new file with mode: 0644]
source/getrabundcommand.h [new file with mode: 0644]
source/getrelabundcommand.cpp [new file with mode: 0644]
source/getrelabundcommand.h [new file with mode: 0644]
source/getsabundcommand.cpp [new file with mode: 0644]
source/getsabundcommand.h [new file with mode: 0644]
source/getseqscommand.cpp [new file with mode: 0644]
source/getseqscommand.h [new file with mode: 0644]
source/getsharedotucommand.cpp [new file with mode: 0644]
source/getsharedotucommand.h [new file with mode: 0644]
source/goodscoverage.cpp [new file with mode: 0644]
source/goodscoverage.h [new file with mode: 0644]
source/gotohoverlap.cpp [new file with mode: 0644]
source/gotohoverlap.hpp [new file with mode: 0644]
source/gower.cpp [new file with mode: 0644]
source/gower.h [new file with mode: 0644]
source/groupmap.cpp [new file with mode: 0644]
source/groupmap.h [new file with mode: 0644]
source/hamming.cpp [new file with mode: 0644]
source/hamming.h [new file with mode: 0644]
source/hcluster.cpp [new file with mode: 0644]
source/hcluster.h [new file with mode: 0644]
source/hclustercommand.cpp [new file with mode: 0644]
source/hclustercommand.h [new file with mode: 0644]
source/heatmap.cpp [new file with mode: 0644]
source/heatmap.h [new file with mode: 0644]
source/heatmapcommand.cpp [new file with mode: 0644]
source/heatmapcommand.h [new file with mode: 0644]
source/heatmapsim.cpp [new file with mode: 0644]
source/heatmapsim.h [new file with mode: 0644]
source/heatmapsimcommand.cpp [new file with mode: 0644]
source/heatmapsimcommand.h [new file with mode: 0644]
source/heip.cpp [new file with mode: 0644]
source/heip.h [new file with mode: 0644]
source/hellinger.cpp [new file with mode: 0644]
source/hellinger.h [new file with mode: 0644]
source/helpcommand.cpp [new file with mode: 0644]
source/helpcommand.h [new file with mode: 0644]
source/homovacommand.cpp [new file with mode: 0644]
source/homovacommand.h [new file with mode: 0644]
source/ignoregaps.h [new file with mode: 0644]
source/indicatorcommand.cpp [new file with mode: 0644]
source/indicatorcommand.h [new file with mode: 0644]
source/inputdata.cpp [new file with mode: 0644]
source/inputdata.h [new file with mode: 0644]
source/interv.f [new file with mode: 0644]
source/intrv.f [new file with mode: 0644]
source/invsimpson.cpp [new file with mode: 0644]
source/invsimpson.h [new file with mode: 0644]
source/jackknife.cpp [new file with mode: 0644]
source/jackknife.h [new file with mode: 0644]
source/kmer.cpp [new file with mode: 0644]
source/kmer.hpp [new file with mode: 0644]
source/kmerdb.cpp [new file with mode: 0644]
source/kmerdb.hpp [new file with mode: 0644]
source/knn.cpp [new file with mode: 0644]
source/knn.h [new file with mode: 0644]
source/libshuff.cpp [new file with mode: 0644]
source/libshuff.h [new file with mode: 0644]
source/libshuffcommand.cpp [new file with mode: 0644]
source/libshuffcommand.h [new file with mode: 0644]
source/linearalgebra.cpp [new file with mode: 0644]
source/linearalgebra.h [new file with mode: 0644]
source/listseqscommand.cpp [new file with mode: 0644]
source/listseqscommand.h [new file with mode: 0644]
source/listvector.cpp [new file with mode: 0644]
source/listvector.hpp [new file with mode: 0644]
source/logsd.cpp [new file with mode: 0644]
source/logsd.h [new file with mode: 0644]
source/makebiomcommand.cpp [new file with mode: 0644]
source/makebiomcommand.h [new file with mode: 0644]
source/makefastqcommand.cpp [new file with mode: 0644]
source/makefastqcommand.h [new file with mode: 0644]
source/makefile [new file with mode: 0644]
source/makegroupcommand.cpp [new file with mode: 0644]
source/makegroupcommand.h [new file with mode: 0644]
source/maligner.cpp [new file with mode: 0644]
source/maligner.h [new file with mode: 0644]
source/manhattan.cpp [new file with mode: 0644]
source/manhattan.h [new file with mode: 0644]
source/mantelcommand.cpp [new file with mode: 0644]
source/mantelcommand.h [new file with mode: 0644]
source/matrixoutputcommand.cpp [new file with mode: 0644]
source/matrixoutputcommand.h [new file with mode: 0644]
source/memchi2.cpp [new file with mode: 0644]
source/memchi2.h [new file with mode: 0644]
source/memchord.cpp [new file with mode: 0644]
source/memchord.h [new file with mode: 0644]
source/memeuclidean.cpp [new file with mode: 0644]
source/memeuclidean.h [new file with mode: 0644]
source/mempearson.cpp [new file with mode: 0644]
source/mempearson.h [new file with mode: 0644]
source/mergefilecommand.cpp [new file with mode: 0644]
source/mergefilecommand.h [new file with mode: 0644]
source/mergegroupscommand.cpp [new file with mode: 0644]
source/mergegroupscommand.h [new file with mode: 0644]
source/metastatscommand.cpp [new file with mode: 0644]
source/metastatscommand.h [new file with mode: 0644]
source/mgclustercommand.cpp [new file with mode: 0644]
source/mgclustercommand.h [new file with mode: 0644]
source/mothur.cpp [new file with mode: 0644]
source/mothur.h [new file with mode: 0644]
source/mothurfisher.cpp [new file with mode: 0644]
source/mothurfisher.h [new file with mode: 0644]
source/mothurmetastats.cpp [new file with mode: 0644]
source/mothurmetastats.h [new file with mode: 0644]
source/mothurout.cpp [new file with mode: 0644]
source/mothurout.h [new file with mode: 0644]
source/myPerseus.cpp [new file with mode: 0644]
source/myPerseus.h [new file with mode: 0644]
source/myseqdist.cpp [new file with mode: 0644]
source/myseqdist.h [new file with mode: 0644]
source/nameassignment.cpp [new file with mode: 0644]
source/nameassignment.hpp [new file with mode: 0644]
source/nast.cpp [new file with mode: 0644]
source/nast.hpp [new file with mode: 0644]
source/nastreport.cpp [new file with mode: 0644]
source/nastreport.hpp [new file with mode: 0644]
source/needlemanoverlap.cpp [new file with mode: 0644]
source/needlemanoverlap.hpp [new file with mode: 0644]
source/nmdscommand.cpp [new file with mode: 0644]
source/nmdscommand.h [new file with mode: 0644]
source/noalign.cpp [new file with mode: 0644]
source/noalign.hpp [new file with mode: 0644]
source/nocommands.cpp [new file with mode: 0644]
source/nocommands.h [new file with mode: 0644]
source/normalizesharedcommand.cpp [new file with mode: 0644]
source/normalizesharedcommand.h [new file with mode: 0644]
source/npshannon.cpp [new file with mode: 0644]
source/npshannon.h [new file with mode: 0644]
source/nseqs.h [new file with mode: 0644]
source/observable.h [new file with mode: 0644]
source/odum.cpp [new file with mode: 0644]
source/odum.h [new file with mode: 0644]
source/onegapdist.h [new file with mode: 0644]
source/onegapignore.h [new file with mode: 0644]
source/optionparser.cpp [new file with mode: 0644]
source/optionparser.h [new file with mode: 0644]
source/ordervector.cpp [new file with mode: 0644]
source/ordervector.hpp [new file with mode: 0644]
source/otuassociationcommand.cpp [new file with mode: 0644]
source/otuassociationcommand.h [new file with mode: 0644]
source/otuhierarchycommand.cpp [new file with mode: 0644]
source/otuhierarchycommand.h [new file with mode: 0644]
source/overlap.cpp [new file with mode: 0644]
source/overlap.hpp [new file with mode: 0644]
source/pairwiseseqscommand.cpp [new file with mode: 0644]
source/pairwiseseqscommand.h [new file with mode: 0644]
source/parsefastaqcommand.cpp [new file with mode: 0644]
source/parsefastaqcommand.h [new file with mode: 0644]
source/parselistscommand.cpp [new file with mode: 0644]
source/parselistscommand.h [new file with mode: 0644]
source/parsimony.cpp [new file with mode: 0644]
source/parsimony.h [new file with mode: 0644]
source/parsimonycommand.cpp [new file with mode: 0644]
source/parsimonycommand.h [new file with mode: 0644]
source/pcacommand.cpp [new file with mode: 0644]
source/pcacommand.h [new file with mode: 0644]
source/pcoacommand.cpp [new file with mode: 0644]
source/pcoacommand.h [new file with mode: 0644]
source/pcrseqscommand.h [new file with mode: 0644]
source/phylodiversitycommand.cpp [new file with mode: 0644]
source/phylodiversitycommand.h [new file with mode: 0644]
source/phylosummary.cpp [new file with mode: 0644]
source/phylosummary.h [new file with mode: 0644]
source/phylotree.cpp [new file with mode: 0644]
source/phylotree.h [new file with mode: 0644]
source/phylotypecommand.cpp [new file with mode: 0644]
source/phylotypecommand.h [new file with mode: 0644]
source/pintail.cpp [new file with mode: 0644]
source/pintail.h [new file with mode: 0644]
source/pipelinepdscommand.cpp [new file with mode: 0644]
source/pipelinepdscommand.h [new file with mode: 0644]
source/prcseqscommand.cpp [new file with mode: 0644]
source/preclustercommand.cpp [new file with mode: 0644]
source/preclustercommand.h [new file with mode: 0644]
source/prng.cpp [new file with mode: 0644]
source/prng.h [new file with mode: 0644]
source/progress.cpp [new file with mode: 0644]
source/progress.hpp [new file with mode: 0644]
source/qstat.cpp [new file with mode: 0644]
source/qstat.h [new file with mode: 0644]
source/qualityscores.cpp [new file with mode: 0644]
source/qualityscores.h [new file with mode: 0644]
source/quitcommand.cpp [new file with mode: 0644]
source/quitcommand.h [new file with mode: 0644]
source/rabundvector.cpp [new file with mode: 0644]
source/rabundvector.hpp [new file with mode: 0644]
source/rarecalc.cpp [new file with mode: 0644]
source/rarecalc.h [new file with mode: 0644]
source/raredisplay.cpp [new file with mode: 0644]
source/raredisplay.h [new file with mode: 0644]
source/rarefact.cpp [new file with mode: 0644]
source/rarefact.h [new file with mode: 0644]
source/rarefactcommand.cpp [new file with mode: 0644]
source/rarefactcommand.h [new file with mode: 0644]
source/rarefactioncurvedata.h [new file with mode: 0644]
source/rarefactsharedcommand.cpp [new file with mode: 0644]
source/rarefactsharedcommand.h [new file with mode: 0644]
source/readblast.cpp [new file with mode: 0644]
source/readblast.h [new file with mode: 0644]
source/readcluster.cpp [new file with mode: 0644]
source/readcluster.h [new file with mode: 0644]
source/readcolumn.cpp [new file with mode: 0644]
source/readcolumn.h [new file with mode: 0644]
source/readdistcommand.cpp [new file with mode: 0644]
source/readdistcommand.h [new file with mode: 0644]
source/readmatrix.hpp [new file with mode: 0644]
source/readotucommand.cpp [new file with mode: 0644]
source/readotucommand.h [new file with mode: 0644]
source/readphylip.cpp [new file with mode: 0644]
source/readphylip.h [new file with mode: 0644]
source/readphylipvector.cpp [new file with mode: 0644]
source/readphylipvector.h [new file with mode: 0644]
source/readtree.cpp [new file with mode: 0644]
source/readtree.h [new file with mode: 0644]
source/readtreecommand.cpp [new file with mode: 0644]
source/readtreecommand.h [new file with mode: 0644]
source/refchimeratest.cpp [new file with mode: 0644]
source/refchimeratest.h [new file with mode: 0644]
source/referencedb.cpp [new file with mode: 0644]
source/referencedb.h [new file with mode: 0644]
source/removegroupscommand.cpp [new file with mode: 0644]
source/removegroupscommand.h [new file with mode: 0644]
source/removelineagecommand.cpp [new file with mode: 0644]
source/removelineagecommand.h [new file with mode: 0644]
source/removeotuscommand.cpp [new file with mode: 0644]
source/removeotuscommand.h [new file with mode: 0644]
source/removerarecommand.cpp [new file with mode: 0644]
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source/trialSwap2.cpp [new file with mode: 0644]
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source/trimflowscommand.h [new file with mode: 0644]
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