git.donarmstrong.com Git - mothur.git/history

]> git.donarmstrong.com Git - mothur.git/history - mothur

2011-01-04	westcott	removed parse.sff command and made its functionality...	blob \| commitdiff \| raw
2011-01-04	pschloss	modifications to shhh.seqs	blob \| commitdiff \| raw \| diff to current
2011-01-03	westcott	added template=self capability to chimers.slayer, worke...	blob \| commitdiff \| raw \| diff to current
2010-12-31	pschloss	added shhh.seqs command	blob \| commitdiff \| raw \| diff to current
2010-12-31	pschloss	added shhh.seqs command	blob \| commitdiff \| raw \| diff to current
2010-12-23	pschloss	addition of trim.flows	blob \| commitdiff \| raw \| diff to current
2010-12-23	westcott	fixed memory leak in maligner minCoverageFilter functio...	blob \| commitdiff \| raw \| diff to current
2010-12-23	westcott	fixed memory leak in decalc findClosest function used...	blob \| commitdiff \| raw \| diff to current
2010-12-22	westcott	chimera.slayer fix	blob \| commitdiff \| raw \| diff to current
2010-12-22	westcott	fixed trim.seqs weird characters thing	blob \| commitdiff \| raw \| diff to current
2010-12-22	westcott	added output filenames and m->control_pressed stuff...	blob \| commitdiff \| raw \| diff to current
2010-12-21	pschloss	more changes to error.seqs command and quality scores...	blob \| commitdiff \| raw \| diff to current
2010-12-20	pschloss	pat's changes to seq.error command	blob \| commitdiff \| raw \| diff to current
2010-12-17	westcott	added design parameter to the indicator command	blob \| commitdiff \| raw \| diff to current
2010-12-17	westcott	added odum, canberra, structchi2, structchord, structe...	blob \| commitdiff \| raw \| diff to current
2010-12-17	westcott	fixed bug with trim.seqs- when a file is blank for...	blob \| commitdiff \| raw \| diff to current
2010-12-14	westcott	added confidence scores to get.lineage and remove.lineage	blob \| commitdiff \| raw \| diff to current
2010-12-13	westcott	added summary file to classify.otu	blob \| commitdiff \| raw \| diff to current
2010-12-13	westcott	classify.seqs summary file fix	blob \| commitdiff \| raw \| diff to current
2010-12-10	westcott	rolled back metastats workspace change	blob \| commitdiff \| raw \| diff to current
2010-12-10	westcott	added shared file to catchall command	blob \| commitdiff \| raw \| diff to current
2010-12-08	westcott	metastats double* to double fix for windows	blob \| commitdiff \| raw \| diff to current
2010-12-08	westcott	consensus.seqs summary file change	blob \| commitdiff \| raw \| diff to current
2010-12-08	westcott	get.oturep ifstream	blob \| commitdiff \| raw \| diff to current
2010-12-08	westcott	get.oturep change and trim.seqs fix	blob \| commitdiff \| raw \| diff to current
2010-12-08	westcott	catchall windows fix	blob \| commitdiff \| raw \| diff to current
2010-12-07	westcott	consensus.seqs can now find a consensus on a whole...	blob \| commitdiff \| raw \| diff to current
2010-12-07	pschloss	changes to seqerrorcommand	blob \| commitdiff \| raw \| diff to current
2010-12-07	westcott	fixed indicator grouping problem	blob \| commitdiff \| raw \| diff to current
2010-12-06	westcott	modified trim.seqs to speed up the append with multiple...	blob \| commitdiff \| raw \| diff to current
2010-12-06	westcott	added summary output to catchall command	blob \| commitdiff \| raw \| diff to current
2010-12-03	westcott	fixed indicator command bug	blob \| commitdiff \| raw \| diff to current
2010-12-03	westcott	fixed craig nelsons weighted bug and paralellized parsimony	blob \| commitdiff \| raw \| diff to current
2010-11-29	westcott	added consensus.seqs command	blob \| commitdiff \| raw \| diff to current
2010-11-22	westcott	finished wrapper for catchall	blob \| commitdiff \| raw \| diff to current
2010-11-22	westcott	added group option to trim.seqs so you can provide...	blob \| commitdiff \| raw \| diff to current
2010-11-19	westcott	added indicator command	blob \| commitdiff \| raw \| diff to current
2010-11-12	westcott	added get.otus and remove.otus commands	blob \| commitdiff \| raw \| diff to current
2010-11-10	westcott	added get.groups and remove.groups commands	blob \| commitdiff \| raw \| diff to current
2010-11-10	westcott	finished sub.sample command	blob \| commitdiff \| raw \| diff to current
2010-11-09	westcott	parsimony calculator changed order of groups to reflect...	blob \| commitdiff \| raw \| diff to current
2010-11-08	westcott	changes to dist.seqs and pairwise.seqs and cluster...	blob \| commitdiff \| raw \| diff to current
2010-11-08	westcott	fixed cluster.split bug	blob \| commitdiff \| raw \| diff to current
2010-11-08	westcott	cluster.split fix	blob \| commitdiff \| raw \| diff to current
2010-11-05	westcott	fixed metastats, added resize to cluster.classic, added...	blob \| commitdiff \| raw \| diff to current
2010-11-05	westcott	cluster.split fix	blob \| commitdiff \| raw \| diff to current
2010-11-02	westcott	changed cluster.classic so that it does not adjust...	blob \| commitdiff \| raw \| diff to current
2010-11-02	westcott	fixed bug with normalize.shared, printed out numbins...	blob \| commitdiff \| raw \| diff to current
2010-11-02	westcott	fixed cluster.classic and added weighted method to...	blob \| commitdiff \| raw \| diff to current
2010-10-29	westcott	added cluster.classic command	blob \| commitdiff \| raw \| diff to current
2010-10-29	westcott	added cluster.classic command	blob \| commitdiff \| raw \| diff to current
2010-10-27	westcott	fixed helps	blob \| commitdiff \| raw \| diff to current
2010-10-26	westcott	done testing 1.14.0	blob \| commitdiff \| raw \| diff to current
2010-10-26	westcott	done testing 1.14.0	blob \| commitdiff \| raw \| diff to current
2010-10-25	westcott	added remove file option to pipeline command in user...	blob \| commitdiff \| raw \| diff to current
2010-10-25	westcott	testing 1.14.0	blob \| commitdiff \| raw \| diff to current
2010-10-25	westcott	testing 1.14.0	blob \| commitdiff \| raw \| diff to current
2010-10-20	westcott	added pairwise.seqs	blob \| commitdiff \| raw \| diff to current
2010-10-19	westcott	fixed bug with aligner and longest base. added deunique...	blob \| commitdiff \| raw \| diff to current
2010-10-19	westcott	fixed phylo.diversity and made trim.seqs with allfiles...	blob \| commitdiff \| raw \| diff to current
2010-10-18	westcott	fixed unifrac.weighted	blob \| commitdiff \| raw \| diff to current
2010-10-18	westcott	fixed unifrac.unweighted	blob \| commitdiff \| raw \| diff to current
2010-10-18	westcott	added ifdefs for extern c	blob \| commitdiff \| raw \| diff to current
2010-10-18	westcott	testing metastats compile	blob \| commitdiff \| raw \| diff to current
2010-10-15	westcott	added pipeline commands which involved change to comman...	blob \| commitdiff \| raw \| diff to current
2010-10-05	westcott	paralellized phylo.diversity	blob \| commitdiff \| raw \| diff to current
2010-10-04	westcott	paralellized rarefaction.single	blob \| commitdiff \| raw \| diff to current
2010-10-04	westcott	changed name of parse.fastaq command to fastq.info	blob \| commitdiff \| raw \| diff to current
2010-09-30	westcott	added parse.fastaq command, added permute option to...	blob \| commitdiff \| raw \| diff to current
2010-09-28	westcott	added distance option to summary.shared	blob \| commitdiff \| raw \| diff to current
2010-09-24	westcott	added get.lineage and remove.lineage commands	blob \| commitdiff \| raw \| diff to current
2010-09-23	westcott	fixed order of unifrac commands so that it matches...	blob \| commitdiff \| raw \| diff to current
2010-09-23	westcott	added cluster.fragments command as well as the nseqs...	blob \| commitdiff \| raw \| diff to current
2010-09-21	westcott	added mothur executable to cvs	blob \| commitdiff \| raw \| diff to current

Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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