| 2009-06-21 |
pschloss | This is v.1.4.0 |
blob | commitdiff | raw |
| 2009-06-16 |
pschloss | a few minor things - pds |
blob | commitdiff | raw | diff to current |
| 2009-06-15 |
westcott | fixing minor bugs |
blob | commitdiff | raw | diff to current |
| 2009-06-15 |
westcott | removed validcommands and put its checking in commandfa... |
blob | commitdiff | raw | diff to current |
| 2009-06-14 |
pschloss | merged pat's trim seqs edits with sarah's major overhau... |
blob | commitdiff | raw | diff to current |
| 2009-06-12 |
westcott | broke up globaldata and moved error checking and help... |
blob | commitdiff | raw | diff to current |
| 2009-06-08 |
westcott | added heatmap.sim command and changed heatmap to heatma... |
blob | commitdiff | raw | diff to current |
| 2009-06-08 |
pschloss | added some features to trim.seqs |
blob | commitdiff | raw | diff to current |
| 2009-06-06 |
pschloss | added trim.seqs command |
blob | commitdiff | raw | diff to current |
| 2009-06-06 |
pschloss | added reverse.seqs command |
blob | commitdiff | raw | diff to current |
| 2009-06-04 |
pschloss | remove some files |
blob | commitdiff | raw | diff to current |
| 2009-06-04 |
westcott | removed readseqs, readfasta, readnexus, readclustal... |
blob | commitdiff | raw | diff to current |
| 2009-06-04 |
pschloss | modified filter.seqs to not store all seqs in memory... |
blob | commitdiff | raw | diff to current |
| 2009-06-04 |
westcott | fixed some bugs |
blob | commitdiff | raw | diff to current |
| 2009-06-03 |
westcott | added get.rabund and get.sabund command and fixed bug... |
blob | commitdiff | raw | diff to current |
| 2009-06-03 |
pschloss | addition of summary.seq command [pds] |
blob | commitdiff | raw | diff to current |
| 2009-05-24 |
pschloss | This contains Pat's bug fixes and updates. It represen... |
blob | commitdiff | raw | diff to current |
| 2009-05-21 |
westcott | modified bin.seqs and get.oturep commands to include... |
blob | commitdiff | raw | diff to current |
| 2009-05-21 |
westcott | fixed Thomas' calculators |
blob | commitdiff | raw | diff to current |
| 2009-05-20 |
westcott | added get.repseqs command, started matrix output command |
blob | commitdiff | raw | diff to current |
| 2009-05-18 |
westcott | added shen calculator |
blob | commitdiff | raw | diff to current |
| 2009-05-18 |
westcott | added help for alignment code and thomas' calcs to... |
blob | commitdiff | raw | diff to current |
| 2009-05-18 |
westcott | added alignment code |
blob | commitdiff | raw | diff to current |
| 2009-05-12 |
westcott | added distance command and filterseqs |
blob | commitdiff | raw | diff to current |
| 2009-05-08 |
westcott | altered venn command to make use of sharedchao for... |
blob | commitdiff | raw | diff to current |
| 2009-05-07 |
westcott | fixed concensus command and modified tree class so... |
blob | commitdiff | raw | diff to current |
| 2009-05-04 |
westcott | fixed xp user bug with rarefact commands and cluster... |
blob | commitdiff | raw | diff to current |
| 2009-05-04 |
westcott | added concensus command and updated calcs |
blob | commitdiff | raw | diff to current |
| 2009-05-04 |
westcott | added concensus command |
blob | commitdiff | raw | diff to current |
| 2009-04-23 |
pschloss | more calculator edits and added coverage and whittaker |
blob | commitdiff | raw | diff to current |
| 2009-04-21 |
westcott | broke apart read matrix file |
blob | commitdiff | raw | diff to current |
| 2009-04-17 |
westcott | added bootstrap.shared command and fixed some bugs... |
blob | commitdiff | raw | diff to current |
| 2009-04-14 |
pschloss | *** empty log message *** |
blob | commitdiff | raw | diff to current |
| 2009-04-14 |
westcott | started shared utilities, updates to venn and heatmap... |
blob | commitdiff | raw | diff to current |
| 2009-04-06 |
westcott | added get.oturep command |
blob | commitdiff | raw | diff to current |
| 2009-04-06 |
westcott | fixed memory leak in parsimony calculator and added... |
blob | commitdiff | raw | diff to current |
| 2009-03-31 |
westcott | started venn command |
blob | commitdiff | raw | diff to current |
| 2009-03-30 |
ryabin | Fixed validParameter() method so line parameter can... |
blob | commitdiff | raw | diff to current |
| 2009-03-30 |
westcott | added sort to heatmap to put shared otus at the top... |
blob | commitdiff | raw | diff to current |
| 2009-03-27 |
westcott | fixed reference issue |
blob | commitdiff | raw | diff to current |
| 2009-03-27 |
westcott | added heatmap command |
blob | commitdiff | raw | diff to current |
| 2009-03-27 |
westcott | added heatmap command |
blob | commitdiff | raw | diff to current |
| 2009-03-27 |
ryabin | added the Calculators Thomas made in the fall. Added... |
blob | commitdiff | raw | diff to current |
| 2009-03-27 |
ryabin | added the Calculators Thomas made in the fall. Added... |
blob | commitdiff | raw | diff to current |
| 2009-03-25 |
westcott | started heatmap command |
blob | commitdiff | raw | diff to current |
| 2009-03-24 |
westcott | added sharedbraycurtis, sharedmorisirahorn, sharedkulcz... |
blob | commitdiff | raw | diff to current |
| 2009-03-23 |
westcott | added sharedochiai and sharedanderberg calculators |
blob | commitdiff | raw | diff to current |
| 2009-03-23 |
westcott | put back no command and worked on libshuff |
blob | commitdiff | raw | diff to current |
| 2009-03-20 |
westcott | removed no command because it is never called now that... |
blob | commitdiff | raw | diff to current |
| 2009-03-16 |
westcott | added nseqs and sharednseqs calculators, removed excess... |
blob | commitdiff | raw | diff to current |
| 2009-03-10 |
westcott | working on libshuff |
blob | commitdiff | raw | diff to current |
| 2009-03-09 |
westcott | fixed bug in read.tree |
blob | commitdiff | raw | diff to current |
| 2009-03-09 |
westcott | deleted read.shared command and added its functionality... |
blob | commitdiff | raw | diff to current |
| 2009-03-06 |
westcott | fixed bug in random option of parsimony() |
blob | commitdiff | raw | diff to current |
| 2009-02-26 |
pschloss | fix weighted unifrac bug in findIndex and randomize... |
blob | commitdiff | raw | diff to current |
| 2009-02-24 |
pschloss | print tree debugger |
blob | commitdiff | raw | diff to current |
| 2009-02-19 |
westcott | added mothur.h and fixed includes in many files |
blob | commitdiff | raw | diff to current |
| 2009-02-18 |
westcott | Johns fix |
blob | commitdiff | raw | diff to current |
| 2009-02-18 |
ryabin | Added get.line command. |
blob | commitdiff | raw | diff to current |
| 2009-02-18 |
ryabin | Added get.line command. |
blob | commitdiff | raw | diff to current |
| 2009-02-18 |
pschloss | fixed bug in read.tree |
blob | commitdiff | raw | diff to current |
| 2009-02-13 |
westcott | added read.shared, broke up globaldata a bit |
blob | commitdiff | raw | diff to current |
| 2009-02-12 |
westcott | fixed bug with displaying info for collect.shared(... |
blob | commitdiff | raw | diff to current |
| 2009-02-11 |
westcott | adding treeclimber and unifrac pieces |
blob | commitdiff | raw | diff to current |
| 2009-01-30 |
pschloss | When Pat tried to compile mothur in Ubuntu linux, there... |
blob | commitdiff | raw | diff to current |
| 2009-01-29 |
westcott | changed all files to be relative to project instead... |
blob | commitdiff | raw | diff to current |
| 2009-01-28 |
westcott | rarefaction default bug |
blob | commitdiff | raw | diff to current |
| 2009-01-26 |
westcott | fixed summary.shared bug and set jumble default to 1. |
blob | commitdiff | raw | diff to current |
| 2009-01-23 |
westcott | fixed bug in sharedcommand and parselistcommand and... |
blob | commitdiff | raw | diff to current |
| 2009-01-22 |
westcott | finishing the container classes, combining read.otu... |
blob | commitdiff | raw | diff to current |
| 2009-01-21 |
westcott | deconvolute command |
blob | commitdiff | raw | diff to current |
| 2009-01-20 |
westcott | changed read.shared to read.list and incorporated the... |
blob | commitdiff | raw | diff to current |
| 2009-01-17 |
pschloss | Updated the project setting parameters |
blob | commitdiff | raw | diff to current |
| 2009-01-16 |
westcott | Initial revision |
blob | commitdiff | raw | diff to current |
|
projects / mothur.git / history