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+ EBC564190F81479000A5AC46 /* sharedjackknife.cpp in Sources */ = {isa = PBXBuildFile; fileRef = EBC564180F81479000A5AC46 /* sharedjackknife.cpp */; };
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37D928240F21331F001D4494 /* sharedchao1.cpp */,
37D928290F21331F001D4494 /* sharedjabund.h */,
37D928280F21331F001D4494 /* sharedjabund.cpp */,
+ EBC564170F81479000A5AC46 /* sharedjackknife.h */,
+ EBC564180F81479000A5AC46 /* sharedjackknife.cpp */,
37D9282B0F21331F001D4494 /* sharedjclass.h */,
37D9282A0F21331F001D4494 /* sharedjclass.cpp */,
37D9282D0F21331F001D4494 /* sharedjest.h */,
3758740C0F7D64FC0040F377 /* sharedmorisitahorn.cpp in Sources */,
3758740D0F7D64FC0040F377 /* sharedochiai.cpp in Sources */,
37519A6B0F80E6EB00FED5E8 /* sharedanderbergs.cpp in Sources */,
+ EBC564190F81479000A5AC46 /* sharedjackknife.cpp in Sources */,
);
runOnlyForDeploymentPostprocessing = 0;
};
if(!valid)
{
cout << "'" << parameter << "' is not a valid parameter for the " << command << " command.\n";
+ cout << "The valid paramters for the " << command << " command are: ";
+ for(int i = 0; i < numParams-1; i++)
+ cout << cParams.at(i) << ", ";
+ cout << "and " << cParams.at(numParams-1) << ".\n";
return false;
}
int pVal;
double piSentinel = 3.14159;
vector<string> range = parameterRanges[parameter];
-
- valid = convertTest(value, pVal);
-
- if(!valid)
- return false;
-
+ vector<string> values;
+ splitAtDash(value, values);
- /********************************************************************************************************
- Special Cases
- *********************************************************************************************************/
-
- if(parameter.compare("precision") == 0)
+ for(int i = 0; i < values.size(); i++)
{
- double logNum = log10((double)pVal);
- double diff = (double)((int)logNum - logNum);
- if(diff != 0)
+ value = values.at(i);
+ valid = convertTest(value, pVal);
+
+ if(!valid)
+ return false;
+
+
+
+ /********************************************************************************************************
+ Special Cases
+ *********************************************************************************************************/
+
+ if(parameter.compare("precision") == 0)
+ {
+ double logNum = log10((double)pVal);
+ double diff = (double)((int)logNum - logNum);
+ if(diff != 0)
+ {
+ cout << "The precision parameter can only take powers of 10 as a value (e.g. 10,1000,1000, etc.)\n";
+ return false;
+ }
+ }
+
+ /************************************************************************************************************/
+
+
+
+ double a,b,c,d,e;
+
+ if(range.at(1).compare("NA") == 0)
+ a = piSentinel;
+ else
+ a = atoi(range.at(1).c_str());
+
+ if(range.at(3).compare("NA") == 0)
+ b = piSentinel;
+ else
+ b = atoi(range.at(3).c_str());
+
+ if(range.at(4).compare("between") == 0)
+ c = 0;
+ else if(range.at(4).compare("only") == 0)
+ c = 1;
+ else
{
- cout << "The precision parameter can only take powers of 10 as a value (e.g. 10,1000,1000, etc.)\n";
+ cout << "The range can only be 'between' or 'only' the bounding numbers.\n";
return false;
}
- }
-
- /************************************************************************************************************/
-
-
-
- double a,b,c,d,e;
-
- if(range.at(1).compare("NA") == 0)
- a = piSentinel;
- else
- a = atoi(range.at(1).c_str());
- if(range.at(3).compare("NA") == 0)
- b = piSentinel;
- else
- b = atoi(range.at(3).c_str());
-
- if(range.at(4).compare("between") == 0)
- c = 0;
- else if(range.at(4).compare("only") == 0)
- c = 1;
- else
- {
- cout << "The range can only be 'between' or 'only' the bounding numbers.\n";
- return false;
- }
-
- if(range.at(0).compare(">") == 0)
- d = 0;
- else if(range.at(0).compare(">=") == 0 || range[3].compare("=>") == 0)
- d = 1;
- else
- {
- cout << "The parameter value can only be '>', '>=', or '=>' the lower bounding number.\n";
- return false;
- }
-
- if(range.at(2).compare("<") == 0)
- e = 0;
- else if(range.at(2).compare("<=") == 0 || range[4].compare("=<") == 0)
- e = 1;
- else
- {
- cout << "The parameter value can only be '<', '<=', or '=<' the upper bounding number.\n";
- return false;
- }
-
- bool a0 = pVal > a;
- bool a1 = pVal >= a;
- bool b0 = pVal < b;
- bool b1 = pVal <= b;
-
- if(c != 1)
- {
- if(a == piSentinel && b == piSentinel)
- return true;
- if(a != piSentinel && b == piSentinel)
+ if(range.at(0).compare(">") == 0)
+ d = 0;
+ else if(range.at(0).compare(">=") == 0 || range[3].compare("=>") == 0)
+ d = 1;
+ else
{
- if(d == 0)
- valid = a0;
- else
- valid = a1;
+ cout << "The parameter value can only be '>', '>=', or '=>' the lower bounding number.\n";
+ return false;
}
- else if(a == piSentinel && b != piSentinel)
+
+ if(range.at(2).compare("<") == 0)
+ e = 0;
+ else if(range.at(2).compare("<=") == 0 || range[4].compare("=<") == 0)
+ e = 1;
+ else
{
- if(e == 0)
- valid = b0;
+ cout << "The parameter value can only be '<', '<=', or '=<' the upper bounding number.\n";
+ return false;
+ }
+
+ bool a0 = pVal > a;
+ bool a1 = pVal >= a;
+ bool b0 = pVal < b;
+ bool b1 = pVal <= b;
+
+ if(c != 1)
+ {
+ if(a != piSentinel && b == piSentinel)
+ {
+ if(d == 0)
+ valid = a0;
+ else
+ valid = a1;
+ }
+ else if(a == piSentinel && b != piSentinel)
+ {
+ if(e == 0)
+ valid = b0;
+ else
+ valid = b1;
+ }
else
- valid = b1;
+ {
+ if(d == 0 && e == 0)
+ valid = (a0 && b0);
+ else if(d == 0 && e == 1)
+ valid = (a0 && b1);
+ else if(d == 1 && e == 0)
+ valid = (a1 && b0);
+ else
+ valid = (a1 && b1);
+ }
}
else
{
- if(d == 0 && e == 0)
- valid = (a0 && b0);
- else if(d == 0 && e == 1)
- valid = (a0 && b1);
- else if(d == 1 && e == 0)
- valid = (a1 && b0);
+ if(a != piSentinel && b == piSentinel)
+ valid = (pVal == a);
+ else if(a == piSentinel && b != piSentinel)
+ valid = (pVal == b);
else
- valid = (a1 && b1);
+ valid = (pVal == a || pVal == b);
}
- }
- else
- {
- if(a == piSentinel && b == piSentinel)
- return true;
- if(a != piSentinel && b == piSentinel)
- valid = (pVal == a);
- else if(a == piSentinel && b != piSentinel)
- valid = (pVal == b);
- else
- valid = (pVal == a || pVal == b);
- }
-
- if(valid)
- return true;
-
- else
- {
- cout << "The '" << parameter << "' parameter needs to be ";
- if(c == 1)
- cout << "either '" << a << "' or '" << b << "'.\n";
- else
+
+
+ if(!valid)
{
- if(a != piSentinel)
- {
- cout << ">";
- if(d != 0)
- cout << "=";
- cout << " '" << a << "'";
- }
- if(b == piSentinel)
- cout << ".\n";
- else if(a != piSentinel)
- cout << " and ";
- if(b != piSentinel)
+ cout << "The '" << parameter << "' parameter needs to be ";
+ if(c == 1)
+ cout << "either '" << a << "' or '" << b << "'.\n";
+ else
{
- cout << "<";
- if(e != 0)
- cout << "=";
- cout << " '" << b << ".\n";
+ if(a != piSentinel)
+ {
+ cout << ">";
+ if(d != 0)
+ cout << "=";
+ cout << " '" << a << "'";
+ }
+ if(b == piSentinel)
+ cout << ".\n";
+ else if(a != piSentinel)
+ cout << " and ";
+ if(b != piSentinel)
+ {
+ cout << "<";
+ if(e != 0)
+ cout << "=";
+ cout << " '" << b << ".\n";
+ }
}
+ return false;
}
- return false;
}
+ return true;
}
catch(exception& e) {
cout << "Standard Error: " << e.what() << " has occurred in the ValidParameters class Function isValidParameter. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
projects / mothur.git / commitdiff