working on windows paralellization, added trimOligos class to be used by trim.flows...

[mothur.git] / seqsummarycommand.h

diff --git a/seqsummarycommand.h b/seqsummarycommand.h
index a7ccb573490135c10c6fdb7258bb46228047d98b..32947cac88b546e386e7e9960715364e384db3b3 100644 (file)
--- a/seqsummarycommand.h
+++ b/seqsummarycommand.h
@@ -39,9 +39,9 @@ private:
        map<string, int> nameMap;
        
        struct linePair {
-               unsigned long int start;
-               unsigned long int end;
-               linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}
+               unsigned long long start;
+               unsigned long long end;
+               linePair(unsigned long long i, unsigned long long j) : start(i), end(j) {}
        };
 
        vector<linePair*> lines;
@@ -51,7 +51,7 @@ private:
        int driverCreateSummary(vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, string, string, linePair*);       
 
        #ifdef USE_MPI
-       int MPICreateSummary(int, int, vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, MPI_File&, MPI_File&, vector<unsigned long int>&); 
+       int MPICreateSummary(int, int, vector<int>&, vector<int>&, vector<int>&, vector<int>&, vector<int>&, MPI_File&, MPI_File&, vector<unsigned long long>&);        
        #endif
 
 
@@ -69,8 +69,8 @@ typedef struct seqSumData {
        vector<int>* longHomoPolymer; 
        string filename; 
        string sumFile; 
-       unsigned long int start;
-       unsigned long int end;
+       unsigned long long start;
+       unsigned long long end;
        int count;
        MothurOut* m;
        string namefile;
@@ -78,7 +78,7 @@ typedef struct seqSumData {
        
        
        seqSumData(){}
-       seqSumData(vector<int>* s, vector<int>* e, vector<int>* l, vector<int>* a, vector<int>* h, string f, string sf, MothurOut* mout, unsigned long int st, unsigned long int en, string na, map<string, int> nam) {
+       seqSumData(vector<int>* s, vector<int>* e, vector<int>* l, vector<int>* a, vector<int>* h, string f, string sf, MothurOut* mout, unsigned long long st, unsigned long long en, string na, map<string, int> nam) {
                startPosition = s;
                endPosition = e;
                seqLength = l;