//functions from mothur.h
//file operations
- vector<unsigned long int> divideFile(string, int&);
+ vector<unsigned long long> divideFile(string, int&);
int divideFile(string, int&, vector<string>&);
- vector<unsigned long int> setFilePosEachLine(string, int&);
- vector<unsigned long int> setFilePosFasta(string, int&);
+ vector<unsigned long long> setFilePosEachLine(string, int&);
+ vector<unsigned long long> setFilePosFasta(string, int&);
string sortFile(string, string);
void appendFiles(string, string);
int renameFile(string, string); //oldname, newname