working on windows paralellization, added trimOligos class to be used by trim.flows...

[mothur.git] / seqerrorcommand.h

diff --git a/seqerrorcommand.h b/seqerrorcommand.h
index 590c554b25ec761a42ecc9593d3b6376b725f15e..cc904ec7f246aed91970b41cf52e39b7d32b896b 100644 (file)
--- a/seqerrorcommand.h
+++ b/seqerrorcommand.h
@@ -62,9 +62,9 @@ private:
        ReferenceDB* rdb;
        
        struct linePair {
-               unsigned long int start;
-               unsigned long int end;
-               linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}
+               unsigned long long start;
+               unsigned long long end;
+               linePair(unsigned long long i, unsigned long long j) : start(i), end(j) {}
        };
        
        vector<int> processIDS;   //processid
@@ -82,7 +82,7 @@ private:
        void printErrorQuality(map<char, vector<int> >);
        void printQualityFR(vector<vector<int> >, vector<vector<int> >);
        
-       int setLines(string, string, string, vector<unsigned long int>&, vector<unsigned long int>&, vector<unsigned long int>&);
+       int setLines(string, string, string, vector<unsigned long long>&, vector<unsigned long long>&, vector<unsigned long long>&);
        int driver(string, string, string, string, string, string, linePair, linePair, linePair);
        int createProcesses(string, string, string, string, string, string);