working on windows paralellization, added trimOligos class to be used by trim.flows...

[mothur.git] / sffinfocommand.cpp

diff --git a/sffinfocommand.cpp b/sffinfocommand.cpp
index 341dd18fd442923df7751b85801714b00cf7a0d0..4965cfd75e06c9f8ba8157056922514581e3e10e 100644 (file)
--- a/sffinfocommand.cpp
+++ b/sffinfocommand.cpp
@@ -466,7 +466,7 @@ int SffInfoCommand::readCommonHeader(ifstream& in, CommonHeader& header){
                        //read offset
                        char buffer2 [8];
                        in.read(buffer2, 8);
-                       header.indexOffset =  be_int8(*(unsigned long int *)(&buffer2));
+                       header.indexOffset =  be_int8(*(unsigned long long *)(&buffer2));
                        
                        //read index length
                        char buffer3 [4];
@@ -513,8 +513,8 @@ int SffInfoCommand::readCommonHeader(ifstream& in, CommonHeader& header){
                        delete[] tempBuffer2;
                                
                        /* Pad to 8 chars */
-                       unsigned long int spotInFile = in.tellg();
-                       unsigned long int spot = (spotInFile + 7)& ~7;  // ~ inverts
+                       unsigned long long spotInFile = in.tellg();
+                       unsigned long long spot = (spotInFile + 7)& ~7;  // ~ inverts
                        in.seekg(spot);
                        
                }else{
@@ -581,8 +581,8 @@ int SffInfoCommand::readHeader(ifstream& in, Header& header){
                        decodeName(header.timestamp, header.region, header.xy, header.name);
                        
                        /* Pad to 8 chars */
-                       unsigned long int spotInFile = in.tellg();
-                       unsigned long int spot = (spotInFile + 7)& ~7;
+                       unsigned long long spotInFile = in.tellg();
+                       unsigned long long spot = (spotInFile + 7)& ~7;
                        in.seekg(spot);
                        
                }else{
@@ -634,8 +634,8 @@ int SffInfoCommand::readSeqData(ifstream& in, seqRead& read, int numFlowReads, i
                        }
        
                        /* Pad to 8 chars */
-                       unsigned long int spotInFile = in.tellg();
-                       unsigned long int spot = (spotInFile + 7)& ~7;
+                       unsigned long long spotInFile = in.tellg();
+                       unsigned long long spot = (spotInFile + 7)& ~7;
                        in.seekg(spot);
                        
                }else{