]>
git.donarmstrong.com Git - biopieces.git/log
martinahansen [Mon, 25 Nov 2013 20:49:29 +0000 (20:49 +0000)]
fixed encoding bug in read_454
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2257
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 25 Nov 2013 20:32:12 +0000 (20:32 +0000)]
fixed encoding in write_454
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2256
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 25 Nov 2013 15:36:04 +0000 (15:36 +0000)]
plot_scores max length set to 100K
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2255
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 7 Nov 2013 12:38:38 +0000 (12:38 +0000)]
fixed installer issue
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2254
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 30 Oct 2013 21:37:08 +0000 (21:37 +0000)]
fixed bug in pair assembler
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2253
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 30 Oct 2013 10:56:28 +0000 (10:56 +0000)]
added patscan_trim method to Seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2252
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 25 Oct 2013 10:29:33 +0000 (10:29 +0000)]
fixed analyze_vals issue
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2251
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 25 Oct 2013 09:42:48 +0000 (09:42 +0000)]
added -o and -x to analyze_vals
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2250
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 24 Oct 2013 10:05:05 +0000 (10:05 +0000)]
refactored backtrack methods to use options hash in method invocations
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2248
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 24 Oct 2013 09:25:12 +0000 (09:25 +0000)]
fixed Seq object creation in sff.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2247
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 24 Oct 2013 08:49:27 +0000 (08:49 +0000)]
now using roche mid module for find_barcodes
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2246
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 24 Oct 2013 08:41:23 +0000 (08:41 +0000)]
added roche mid module
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2245
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 24 Oct 2013 08:19:44 +0000 (08:19 +0000)]
adding table.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2244
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 23 Oct 2013 12:47:14 +0000 (12:47 +0000)]
removed commented out stale code
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2243
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 18 Oct 2013 13:01:02 +0000 (13:01 +0000)]
fixed method name change
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2242
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 17 Oct 2013 12:24:07 +0000 (12:24 +0000)]
fixed QA_454_report.rb to work with new analyze_vals
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2241
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 17 Oct 2013 12:13:57 +0000 (12:13 +0000)]
fixed QA_454_report.rb to work with new analyze_vals
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2240
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 17 Oct 2013 11:12:41 +0000 (11:12 +0000)]
fixed QA_454_report.rb to work with new analyze_vals
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2239
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 17 Oct 2013 07:34:56 +0000 (07:34 +0000)]
fixed QA_454_report.rb to work with new analyze_vals
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2238
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 16 Oct 2013 08:02:04 +0000 (08:02 +0000)]
cleanup of analyze_vals added analyze_scores
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2236
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 15 Oct 2013 20:06:45 +0000 (20:06 +0000)]
rewrote analyze_vals
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2234
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 15 Oct 2013 17:48:22 +0000 (17:48 +0000)]
rewrote write_tab
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2232
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 15 Oct 2013 17:45:28 +0000 (17:45 +0000)]
rewrote write_tab
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2231
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 8 Oct 2013 09:39:58 +0000 (09:39 +0000)]
refactoring of assemble_pairs
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2229
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 8 Oct 2013 08:46:04 +0000 (08:46 +0000)]
fixed seq qual length check
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2228
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 7 Oct 2013 15:05:20 +0000 (15:05 +0000)]
DRY refactorying of backtrack code
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2227
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 7 Oct 2013 14:23:35 +0000 (14:23 +0000)]
gzip fiddling
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2226
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 7 Oct 2013 12:13:26 +0000 (12:13 +0000)]
exchanged zlib code with commandline gzip
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2225
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 7 Oct 2013 08:40:53 +0000 (08:40 +0000)]
fixed symlink flaw in file type detection
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2224
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 1 Oct 2013 18:33:22 +0000 (18:33 +0000)]
changed Seq.new argument to hash
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2223
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 26 Sep 2013 12:48:14 +0000 (12:48 +0000)]
added test for length of seq/qual mismatch
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2222
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 26 Sep 2013 10:18:14 +0000 (10:18 +0000)]
disabling buggy bzip2-ruby
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2221
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 26 Sep 2013 09:43:24 +0000 (09:43 +0000)]
temporary fix of bzip2 read problem
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2220
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 26 Sep 2013 08:09:07 +0000 (08:09 +0000)]
added prefix option to write_fasta_files and write_fastq_files
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2218
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 25 Sep 2013 20:06:28 +0000 (20:06 +0000)]
added bzip2-ruby gem requirement
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2216
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 25 Sep 2013 20:05:23 +0000 (20:05 +0000)]
added bzip2-ruby gem requirement
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2215
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 25 Sep 2013 19:50:03 +0000 (19:50 +0000)]
added gzip/bzip2 output option to write_fastq_files
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2214
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 25 Sep 2013 19:29:53 +0000 (19:29 +0000)]
added support for gzip/bzip2 in write_fasta_files (and wrap)
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2212
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 25 Sep 2013 14:34:00 +0000 (14:34 +0000)]
ported write_fasta to ruby enabling bzip2 support
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2210
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 25 Sep 2013 14:26:37 +0000 (14:26 +0000)]
added bzip output test to write_fastq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2209
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 25 Sep 2013 14:23:05 +0000 (14:23 +0000)]
adding bzip2 support in ruby
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2208
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 23 Sep 2013 12:29:14 +0000 (12:29 +0000)]
fixed isseu in find_orphans
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2207
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 23 Sep 2013 11:48:35 +0000 (11:48 +0000)]
created find_orphans Biopiece
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2205
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 18 Sep 2013 19:59:48 +0000 (19:59 +0000)]
beautifing ambiguity.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2204
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 18 Sep 2013 18:17:08 +0000 (18:17 +0000)]
implemented hamming_dist in inline C
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2203
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 18 Sep 2013 11:44:49 +0000 (11:44 +0000)]
add comments to ambiguity.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2202
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 18 Sep 2013 11:16:16 +0000 (11:16 +0000)]
fixed broken tests not workin with Ruby2
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2201
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 18 Sep 2013 10:30:49 +0000 (10:30 +0000)]
added amiguity.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2200
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 18 Sep 2013 10:29:46 +0000 (10:29 +0000)]
added mem.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2199
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 18 Sep 2013 10:17:27 +0000 (10:17 +0000)]
added ambiguity to hamming_distance
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2198
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 16 Sep 2013 14:46:00 +0000 (14:46 +0000)]
fixed overlap bug in patscan_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2197
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 13 Sep 2013 13:07:50 +0000 (13:07 +0000)]
added missing cpus switch to uclust_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2195
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 9 Sep 2013 19:05:50 +0000 (19:05 +0000)]
polish usearch_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2193
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 9 Sep 2013 19:04:47 +0000 (19:04 +0000)]
polish uclust_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2192
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 9 Sep 2013 18:58:53 +0000 (18:58 +0000)]
fixing usearch upgrade
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2190
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 6 Sep 2013 10:17:57 +0000 (10:17 +0000)]
upgraded uclust_seq to support usearch7
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2189
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 24 Jun 2013 10:55:33 +0000 (10:55 +0000)]
fixed genbank and embl parsing of 5'UTR and 3'UTR
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2187
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 24 Jun 2013 09:59:49 +0000 (09:59 +0000)]
added \r remove hack to genbank/embl parsers
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2186
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sun, 23 Jun 2013 09:38:18 +0000 (09:38 +0000)]
moved inline C code to seperate file
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2185
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 21 Jun 2013 09:35:03 +0000 (09:35 +0000)]
added edit_distance method to seq.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2184
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 21 Jun 2013 09:09:29 +0000 (09:09 +0000)]
fixed ambiguity in levenshtein.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2183
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 20 Jun 2013 21:09:51 +0000 (21:09 +0000)]
added levenshtein edit distance calculator
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2182
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 20 Jun 2013 21:07:14 +0000 (21:07 +0000)]
added levenshtein edit distance calculator
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2181
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 20 Jun 2013 21:05:55 +0000 (21:05 +0000)]
added levenshtein edit distance calculator
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2180
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 17 Jun 2013 09:56:22 +0000 (09:56 +0000)]
updated patscan_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2179
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 17 Jun 2013 09:49:58 +0000 (09:49 +0000)]
updated patscan_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2177
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 4 Jun 2013 14:05:26 +0000 (14:05 +0000)]
added missing files
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2176
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 4 Jun 2013 14:00:16 +0000 (14:00 +0000)]
revamped find_homopolymers
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2174
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 16 May 2013 09:04:37 +0000 (09:04 +0000)]
more verbose grab output
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2172
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 16 May 2013 08:56:09 +0000 (08:56 +0000)]
added verbose count to grab
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2170
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 6 May 2013 09:17:39 +0000 (09:17 +0000)]
fixed QA_Illumina_report.rb encoding
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2169
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 29 Apr 2013 09:52:27 +0000 (09:52 +0000)]
fixed missing BP_TMP dir feature
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2167
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 18 Apr 2013 08:17:30 +0000 (08:17 +0000)]
fixed divide bug in compute
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2162
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 11 Apr 2013 17:29:24 +0000 (17:29 +0000)]
fixed bug in index_vals
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2157
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Thu, 11 Apr 2013 17:10:35 +0000 (17:10 +0000)]
added index_vals biopiece
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2155
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 20 Mar 2013 06:42:06 +0000 (06:42 +0000)]
corrected pcr_seq revcomp of patterns
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2153
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Sat, 16 Mar 2013 18:47:24 +0000 (18:47 +0000)]
changed upper/lower case output in assemble_pairs
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2151
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 12:03:13 +0000 (12:03 +0000)]
dropped pandaseq requirement
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2150
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 11:51:30 +0000 (11:51 +0000)]
fixed minor upcase bug in assemble.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2149
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 11:46:21 +0000 (11:46 +0000)]
upgraded tests of read_sff
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2148
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 11:41:49 +0000 (11:41 +0000)]
finish assemble_pairs revamp
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2147
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 11:33:46 +0000 (11:33 +0000)]
assemble_pairs revamp
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2145
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 10:30:54 +0000 (10:30 +0000)]
added comments to code
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2142
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 10:20:58 +0000 (10:20 +0000)]
added name check to assemble_pairs2
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2141
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 09:59:23 +0000 (09:59 +0000)]
added check for minimum seq length
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2140
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 09:58:08 +0000 (09:58 +0000)]
added check for minimum seq length
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2139
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 09:25:30 +0000 (09:25 +0000)]
fixed defaults and key names
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2138
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 09:12:52 +0000 (09:12 +0000)]
upgraded assemble.rb to chose proper residue when mismatch
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2137
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Wed, 13 Mar 2013 06:58:56 +0000 (06:58 +0000)]
added hacky thing to avoid warning from zlib
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2136
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 12 Mar 2013 21:33:40 +0000 (21:33 +0000)]
added keys to assemble_pairs2
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2135
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 12 Mar 2013 18:13:17 +0000 (18:13 +0000)]
added assemble_pairs2
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2134
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 12 Mar 2013 18:12:29 +0000 (18:12 +0000)]
added seq/assemble.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2133
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Tue, 12 Mar 2013 10:44:52 +0000 (10:44 +0000)]
fixed score base bug in sff.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2132
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 11 Mar 2013 18:15:08 +0000 (18:15 +0000)]
added word_size switch to blast_seq_pair
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2127
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 11 Mar 2013 14:49:14 +0000 (14:49 +0000)]
changed blast_seq_pair to do multiple pairs
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2125
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Mon, 11 Mar 2013 06:52:14 +0000 (06:52 +0000)]
added [] og []= to seq.rb
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2124
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 8 Mar 2013 18:42:08 +0000 (18:42 +0000)]
added split_pair_seq biopiece
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2122
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 8 Mar 2013 14:41:32 +0000 (14:41 +0000)]
added new Biopiece merge_pair_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2121
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 8 Mar 2013 14:39:37 +0000 (14:39 +0000)]
added new Biopiece merge_pair_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2120
74ccb610-7750-0410-82ae-
013aeee3265d
martinahansen [Fri, 8 Mar 2013 13:10:10 +0000 (13:10 +0000)]
dropped cat_seq Biopieces since join_seq exists
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2118
74ccb610-7750-0410-82ae-
013aeee3265d
projects / biopieces.git / log