]> git.donarmstrong.com Git - biopieces.git/commitdiff
fixed method name change
authormartinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Fri, 18 Oct 2013 13:01:02 +0000 (13:01 +0000)
committermartinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Fri, 18 Oct 2013 13:01:02 +0000 (13:01 +0000)
git-svn-id: http://biopieces.googlecode.com/svn/trunk@2242 74ccb610-7750-0410-82ae-013aeee3265d

code_ruby/lib/maasha/sam.rb

index 14a910ffd4a46e7cef036a290da040abf0f632b7..8772e6382f20913d2fca3c9076b90475d2824564 100644 (file)
@@ -76,7 +76,7 @@ class Sam < Filesys
     bp[:SEQ]      = sam[:SEQ].seq
 
     unless sam[:SEQ].qual.nil?
-      bp[:SCORES] = sam[:SEQ].convert_phred2illumina!.qual
+      bp[:SCORES] = sam[:SEQ].qual_convert!(:base_33, :base_64).qual
     end
 
     if sam[:NM] and sam[:NM].to_i > 0