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biopieces.git
2011-06-15 martinahansenadded tests for blast_seq_pair commit | commitdiff | tree | snapshot
2011-06-14 martinahansenhackery changes to plot_matches to deal with blast... commit | commitdiff | tree | snapshot
2011-06-14 martinahansenblast_seq_pair polish commit | commitdiff | tree | snapshot
2011-06-14 martinahansenblast_seq_pair polish commit | commitdiff | tree | snapshot
2011-06-14 martinahansenblast_seq_pair polish commit | commitdiff | tree | snapshot
2011-06-14 martinahansenadded blast_seq_pair commit | commitdiff | tree | snapshot
2011-06-13 martinahansenadded Seq.type_guess to ruby code commit | commitdiff | tree | snapshot
2011-06-08 martinahansenadded tests for remove_keys commit | commitdiff | tree | snapshot
2011-06-08 martinahansenadded tests for remove_indels commit | commitdiff | tree | snapshot
2011-06-08 martinahansenadded tests for reverse_seq commit | commitdiff | tree | snapshot
2011-06-08 martinahansenadded tests for complement_seq commit | commitdiff | tree | snapshot
2011-06-06 martinahansenfixed cat_seq commit | commitdiff | tree | snapshot
2011-06-06 martinahansenadded cat_seq biopiece commit | commitdiff | tree | snapshot
2011-06-05 martinahansenshortened messages in test suite commit | commitdiff | tree | snapshot
2011-06-05 martinahansenadded tests for uniq_vals commit | commitdiff | tree | snapshot
2011-06-05 martinahansenadded tests for sort_records commit | commitdiff | tree | snapshot
2011-06-04 martinahansenadded tests for transliterate_vals commit | commitdiff | tree | snapshot
2011-06-04 martinahansenadded tests for transliterate_seq commit | commitdiff | tree | snapshot
2011-06-03 martinahansenadded tests for length_vals commit | commitdiff | tree | snapshot
2011-06-03 martinahansenadded test for calc_bit_scores commit | commitdiff | tree | snapshot
2011-05-31 martinahansenadded assemble_seq_ray commit | commitdiff | tree | snapshot
2011-05-30 martinahansenupgraded mean_scores commit | commitdiff | tree | snapshot
2011-05-30 martinahansenrename switch to something more appropriate commit | commitdiff | tree | snapshot
2011-05-30 martinahansenremoved unused code from find_adaptor commit | commitdiff | tree | snapshot
2011-05-30 martinahansenadded perl module and ruby gem test to bp_test commit | commitdiff | tree | snapshot
2011-05-29 martinahansensquashing bugs in find_adaptor commit | commitdiff | tree | snapshot
2011-05-29 martinahansenworking on find_adaptor commit | commitdiff | tree | snapshot
2011-05-28 martinahansenadded multithreading to find_adaptor commit | commitdiff | tree | snapshot
2011-05-28 martinahansenadded multithreading to find_adaptor commit | commitdiff | tree | snapshot
2011-05-26 martinahansenadded order_pairs commit | commitdiff | tree | snapshot
2011-05-26 martinahansenfixed type in assemble_seq_idba commit | commitdiff | tree | snapshot
2011-05-26 martinahansenfixed mate-pair name issue in assemble_seq_idba commit | commitdiff | tree | snapshot
2011-05-25 martinahansenadded plot_distribution biopiece commit | commitdiff | tree | snapshot
2011-05-25 martinahansenpolished plot_scores commit | commitdiff | tree | snapshot
2011-05-24 martinahansenupgraded bp_update alias due to complaints commit | commitdiff | tree | snapshot
2011-05-24 martinahansenfixed fence post bug in plot_lendist commit | commitdiff | tree | snapshot
2011-05-24 martinahansenworking on clean_reads scripts commit | commitdiff | tree | snapshot
2011-05-24 martinahansenworking on clean_reads scripts commit | commitdiff | tree | snapshot
2011-05-24 martinahansenfixed strange bug in find_adaptor commit | commitdiff | tree | snapshot
2011-05-24 martinahansenfixed asseble_seq_velvet commit | commitdiff | tree | snapshot
2011-05-24 martinahansenfixed asseble_seq_idba commit | commitdiff | tree | snapshot
2011-05-24 martinahansenpolished bp_scripts commit | commitdiff | tree | snapshot
2011-05-23 martinahansenfixed find_adaptor tests commit | commitdiff | tree | snapshot
2011-05-23 martinahansenpolishing find_adaptor commit | commitdiff | tree | snapshot
2011-05-23 martinahansenfixed critical flaw in find_adaptor commit | commitdiff | tree | snapshot
2011-05-23 martinahansenfixed critical bug in biopieces.rb and reworked find_ad... commit | commitdiff | tree | snapshot
2011-05-23 martinahansencommitting major ruby overhaul commit | commitdiff | tree | snapshot
2011-05-19 martinahansenfiddleling with biopieces.rb commit | commitdiff | tree | snapshot
2011-05-19 martinahansenpreparing biopieces.rb rewrite commit | commitdiff | tree | snapshot
2011-05-18 martinahansenfixed a path in biopieces.rb commit | commitdiff | tree | snapshot
2011-05-18 martinahansenfixed paths in assemble_seq_idba + velvet commit | commitdiff | tree | snapshot
2011-05-18 martinahansenrefactored patternmatcher commit | commitdiff | tree | snapshot
2011-05-13 martinahansenupdated 00README file in ruby dir commit | commitdiff | tree | snapshot
2011-05-13 martinahansencleaning up old ruby trunk commit | commitdiff | tree | snapshot
2011-05-13 martinahansenchanged layout of ruby source commit | commitdiff | tree | snapshot
2011-05-13 martinahansenadd dist option to find_adaptor commit | commitdiff | tree | snapshot
2011-05-12 martinahansenupgraded add_ident tests commit | commitdiff | tree | snapshot
2011-05-12 martinahansenadded offset switch to add_ident commit | commitdiff | tree | snapshot
2011-05-11 martinahansen1 vector only patternmatcher.rb now :o) commit | commitdiff | tree | snapshot
2011-05-10 martinahansenfixed pipes for adaptor removal commit | commitdiff | tree | snapshot
2011-05-10 martinahansenadded fix for negative 454 decimal values commit | commitdiff | tree | snapshot
2011-05-10 martinahansenfixed type cast bug commit | commitdiff | tree | snapshot
2011-05-10 martinahansenadded procedure switch to analyze_assembly commit | commitdiff | tree | snapshot
2011-05-10 martinahansenadded procedure switch to find_genes commit | commitdiff | tree | snapshot
2011-05-10 martinahansenpolished analyze_assembly commit | commitdiff | tree | snapshot
2011-05-09 martinahansenpolishing gene cov feature in analyze_assembly commit | commitdiff | tree | snapshot
2011-05-09 martinahansenadded gene coverage to analyze_assembly commit | commitdiff | tree | snapshot
2011-05-09 martinahansenadded coverage method to prodigal.rb commit | commitdiff | tree | snapshot
2011-05-09 martinahansenadded fix to find_genes commit | commitdiff | tree | snapshot
2011-05-09 martinahansenported find_genes to ruby commit | commitdiff | tree | snapshot
2011-05-09 martinahansenfixed indentation in uclust_seq commit | commitdiff | tree | snapshot
2011-05-09 martinahansenadded prodigal.rb commit | commitdiff | tree | snapshot
2011-05-09 martinahansenupdated genbank.rb to allow empty defaults commit | commitdiff | tree | snapshot
2011-05-06 martinahansenadded full switch to find_genes commit | commitdiff | tree | snapshot
2011-05-06 martinahansenremoving sequence file from assemble_seq* commit | commitdiff | tree | snapshot
2011-05-05 martinahansenpolished asseble_seq_velvet commit | commitdiff | tree | snapshot
2011-05-05 martinahansenremoved name option from asseble_seq_idba commit | commitdiff | tree | snapshot
2011-05-04 martinahansenadded assemble_seq_velvet draft biopiece commit | commitdiff | tree | snapshot
2011-05-04 martinahansenfixed default cast for lists in biopieces.rb commit | commitdiff | tree | snapshot
2011-05-04 martinahansenrefactoring arg name in assemble_seq_idba commit | commitdiff | tree | snapshot
2011-05-04 martinahansenadded --clean to assemble_seq_idba commit | commitdiff | tree | snapshot
2011-05-03 martinahansenpolished assemble_seq_idba commit | commitdiff | tree | snapshot
2011-05-03 martinahansenadded assemble_seq_idba commit | commitdiff | tree | snapshot
2011-05-03 martinahansenmade plot_scores 1-based commit | commitdiff | tree | snapshot
2011-05-03 martinahansencorrected plot_matches missing -persists switch commit | commitdiff | tree | snapshot
2011-05-03 martinahansenadded titles to plot_scores commit | commitdiff | tree | snapshot
2011-05-02 martinahansenfixed typo in analyce_gc commit | commitdiff | tree | snapshot
2011-05-02 martinahansencode update commit | commitdiff | tree | snapshot
2011-05-02 martinahansenported plot_scores to ruby commit | commitdiff | tree | snapshot
2011-05-02 martinahansenremoved redundant line from plot_scores commit | commitdiff | tree | snapshot
2011-05-02 martinahansentesting unspecified features commit | commitdiff | tree | snapshot
2011-05-02 martinahansenadded tests to analyze_gc commit | commitdiff | tree | snapshot
2011-04-26 martinahansenadaptor script posilished commit | commitdiff | tree | snapshot
2011-04-26 martinahansenadded useful biopiece scripts commit | commitdiff | tree | snapshot
2011-04-19 martinahansenfixed bit fields in pattern matcher commit | commitdiff | tree | snapshot
2011-04-19 martinahansenpolishing find_adaptor commit | commitdiff | tree | snapshot
2011-04-19 martinahansenadded cache option to find_adaptor commit | commitdiff | tree | snapshot
2011-04-19 martinahansenadded cache option to find_adaptor commit | commitdiff | tree | snapshot
2011-04-18 martinahansenadded clip_adaptor biopiece commit | commitdiff | tree | snapshot
2011-04-18 martinahansenadded clip_adaptor biopiece commit | commitdiff | tree | snapshot
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