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hackery changes to plot_matches to deal with blast data
2011-06-14 martinahansenhackery changes to plot_matches to deal with blast...
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2011-06-14 martinahansenblast_seq_pair polish
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2011-06-14 martinahansenblast_seq_pair polish
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2011-06-14 martinahansenblast_seq_pair polish
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2011-06-14 martinahansenadded blast_seq_pair
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2011-06-13 martinahansenadded Seq.type_guess to ruby code
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2011-06-08 martinahansenadded tests for remove_keys
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2011-06-08 martinahansenadded tests for remove_indels
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2011-06-08 martinahansenadded tests for reverse_seq
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2011-06-08 martinahansenadded tests for complement_seq
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2011-06-06 martinahansenfixed cat_seq
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2011-06-06 martinahansenadded cat_seq biopiece
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2011-06-05 martinahansenshortened messages in test suite
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2011-06-05 martinahansenadded tests for uniq_vals
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2011-06-05 martinahansenadded tests for sort_records
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2011-06-04 martinahansenadded tests for transliterate_vals
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2011-06-04 martinahansenadded tests for transliterate_seq
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2011-06-03 martinahansenadded tests for length_vals
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2011-06-03 martinahansenadded test for calc_bit_scores
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2011-05-31 martinahansenadded assemble_seq_ray
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2011-05-30 martinahansenupgraded mean_scores
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2011-05-30 martinahansenrename switch to something more appropriate
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2011-05-30 martinahansenremoved unused code from find_adaptor
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2011-05-30 martinahansenadded perl module and ruby gem test to bp_test
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2011-05-29 martinahansensquashing bugs in find_adaptor
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2011-05-29 martinahansenworking on find_adaptor
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2011-05-28 martinahansenadded multithreading to find_adaptor
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2011-05-28 martinahansenadded multithreading to find_adaptor
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2011-05-26 martinahansenadded order_pairs
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2011-05-26 martinahansenfixed type in assemble_seq_idba
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2011-05-26 martinahansenfixed mate-pair name issue in assemble_seq_idba
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2011-05-25 martinahansenadded plot_distribution biopiece
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2011-05-25 martinahansenpolished plot_scores
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2011-05-24 martinahansenupgraded bp_update alias due to complaints
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2011-05-24 martinahansenfixed fence post bug in plot_lendist
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2011-05-24 martinahansenworking on clean_reads scripts
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2011-05-24 martinahansenworking on clean_reads scripts
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2011-05-24 martinahansenfixed strange bug in find_adaptor
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2011-05-24 martinahansenfixed asseble_seq_velvet
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2011-05-24 martinahansenfixed asseble_seq_idba
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2011-05-24 martinahansenpolished bp_scripts
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2011-05-23 martinahansenfixed find_adaptor tests
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2011-05-23 martinahansenpolishing find_adaptor
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2011-05-23 martinahansenfixed critical flaw in find_adaptor
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2011-05-23 martinahansenfixed critical bug in biopieces.rb and reworked find_adaptor
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2011-05-23 martinahansencommitting major ruby overhaul
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2011-05-19 martinahansenfiddleling with biopieces.rb
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2011-05-19 martinahansenpreparing biopieces.rb rewrite
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2011-05-18 martinahansenfixed a path in biopieces.rb
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2011-05-18 martinahansenfixed paths in assemble_seq_idba + velvet
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2011-05-18 martinahansenrefactored patternmatcher
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2011-05-13 martinahansenupdated 00README file in ruby dir
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2011-05-13 martinahansencleaning up old ruby trunk
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2011-05-13 martinahansenchanged layout of ruby source
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2011-05-13 martinahansenadd dist option to find_adaptor
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2011-05-12 martinahansenupgraded add_ident tests
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2011-05-12 martinahansenadded offset switch to add_ident
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2011-05-11 martinahansen1 vector only patternmatcher.rb now :o)
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2011-05-10 martinahansenfixed pipes for adaptor removal
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2011-05-10 martinahansenadded fix for negative 454 decimal values
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2011-05-10 martinahansenfixed type cast bug
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2011-05-10 martinahansenadded procedure switch to analyze_assembly
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2011-05-10 martinahansenadded procedure switch to find_genes
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2011-05-10 martinahansenpolished analyze_assembly
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2011-05-09 martinahansenpolishing gene cov feature in analyze_assembly
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2011-05-09 martinahansenadded gene coverage to analyze_assembly
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2011-05-09 martinahansenadded coverage method to prodigal.rb
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2011-05-09 martinahansenadded fix to find_genes
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2011-05-09 martinahansenported find_genes to ruby
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2011-05-09 martinahansenfixed indentation in uclust_seq
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2011-05-09 martinahansenadded prodigal.rb
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2011-05-09 martinahansenupdated genbank.rb to allow empty defaults
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2011-05-06 martinahansenadded full switch to find_genes
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2011-05-06 martinahansenremoving sequence file from assemble_seq*
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2011-05-05 martinahansenpolished asseble_seq_velvet
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2011-05-05 martinahansenremoved name option from asseble_seq_idba
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2011-05-04 martinahansenadded assemble_seq_velvet draft biopiece
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2011-05-04 martinahansenfixed default cast for lists in biopieces.rb
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2011-05-04 martinahansenrefactoring arg name in assemble_seq_idba
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2011-05-04 martinahansenadded --clean to assemble_seq_idba
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2011-05-03 martinahansenpolished assemble_seq_idba
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2011-05-03 martinahansenadded assemble_seq_idba
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2011-05-03 martinahansenmade plot_scores 1-based
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2011-05-03 martinahansencorrected plot_matches missing -persists switch
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2011-05-03 martinahansenadded titles to plot_scores
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2011-05-02 martinahansenfixed typo in analyce_gc
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2011-05-02 martinahansencode update
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2011-05-02 martinahansenported plot_scores to ruby
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2011-05-02 martinahansenremoved redundant line from plot_scores
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2011-05-02 martinahansentesting unspecified features
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2011-05-02 martinahansenadded tests to analyze_gc
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2011-04-26 martinahansenadaptor script posilished
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2011-04-26 martinahansenadded useful biopiece scripts
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2011-04-19 martinahansenfixed bit fields in pattern matcher
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2011-04-19 martinahansenpolishing find_adaptor
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2011-04-19 martinahansenadded cache option to find_adaptor
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2011-04-19 martinahansenadded cache option to find_adaptor
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2011-04-18 martinahansenadded clip_adaptor biopiece
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2011-04-18 martinahansenadded clip_adaptor biopiece
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2011-04-18 martinahansenadded tests for find_adaptor
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