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2009-06-02	martinahansen	more read_ tools migrated	commit \| commitdiff \| tree
2009-06-02	martinahansen	migrating read_ tools	commit \| commitdiff \| tree
2009-06-02	martinahansen	migration of all write tools done	commit \| commitdiff \| tree
2009-06-02	martinahansen	migrated 3 write tools	commit \| commitdiff \| tree
2009-05-29	martinahansen	migrated final plotters	commit \| commitdiff \| tree
2009-05-29	martinahansen	migrated plot_lendist	commit \| commitdiff \| tree
2009-05-29	martinahansen	migrated plot_karyogram	commit \| commitdiff \| tree
2009-05-29	martinahansen	migrated plot_histogram	commit \| commitdiff \| tree
2009-05-29	martinahansen	migrated plot_chrdist	commit \| commitdiff \| tree
2009-05-28	martinahansen	migrated remove_adaptor	commit \| commitdiff \| tree
2009-05-28	martinahansen	migrated 4 more	commit \| commitdiff \| tree
2009-05-28	martinahansen	migrated tile_seq	commit \| commitdiff \| tree
2009-05-28	martinahansen	migrated sort_records	commit \| commitdiff \| tree
2009-05-28	martinahansen	migrated sum_vals	commit \| commitdiff \| tree
2009-05-28	martinahansen	migrated patscan_seq	commit \| commitdiff \| tree
2009-05-28	martinahansen	migrated patscan_seq	commit \| commitdiff \| tree
2009-05-27	martinahansen	migrated oligo_freq	commit \| commitdiff \| tree
2009-05-27	martinahansen	migrated trans family	commit \| commitdiff \| tree
2009-05-27	martinahansen	migrated merge_records	commit \| commitdiff \| tree
2009-05-27	martinahansen	migrated max, min, mean, and median _vals	commit \| commitdiff \| tree
2009-05-27	martinahansen	migrated match_seq	commit \| commitdiff \| tree
2009-05-27	martinahansen	added 3 more	commit \| commitdiff \| tree
2009-05-26	martinahansen	migrated 3 biopieces	commit \| commitdiff \| tree
2009-05-26	martinahansen	migrated create_vmatch_index	commit \| commitdiff \| tree
2009-05-26	martinahansen	migrated create_weight_matrix	commit \| commitdiff \| tree
2009-05-26	martinahansen	migrated count_vals	commit \| commitdiff \| tree
2009-05-26	martinahansen	migrated count_records	commit \| commitdiff \| tree
2009-05-26	martinahansen	migrated and fixed calc_fixedstep	commit \| commitdiff \| tree
2009-05-25	martinahansen	migrated calc_bit_scores	commit \| commitdiff \| tree
2009-05-25	martinahansen	migrated blat_seq	commit \| commitdiff \| tree
2009-05-24	martinahansen	migrated assemble_tag_contigs	commit \| commitdiff \| tree
2009-05-24	martinahansen	migrated split biopieces	commit \| commitdiff \| tree
2009-05-24	martinahansen	migrated split biopieces	commit \| commitdiff \| tree
2009-05-24	martinahansen	migrated random_records	commit \| commitdiff \| tree
2009-05-24	martinahansen	magrated analyze biopieces	commit \| commitdiff \| tree
2009-05-24	martinahansen	magrated analyze biopieces	commit \| commitdiff \| tree
2009-05-24	martinahansen	migrated write_align	commit \| commitdiff \| tree
2009-05-24	martinahansen	migrated align_seq	commit \| commitdiff \| tree
2009-05-24	martinahansen	migrated add_ident	commit \| commitdiff \| tree
2009-05-24	martinahansen	migrated shuffle_seq	commit \| commitdiff \| tree
2009-05-24	martinahansen	migrated complement_seq and reverse_seq	commit \| commitdiff \| tree
2009-05-23	martinahansen	migrated extract_seq	commit \| commitdiff \| tree
2009-05-23	martinahansen	rewrite begin	commit \| commitdiff \| tree
2009-05-14	martinahansen	polishing split_vals	commit \| commitdiff \| tree
2009-05-13	martinahansen	added lowercase_seq symlink	commit \| commitdiff \| tree
2009-05-13	martinahansen	fixing lowercase_seq	commit \| commitdiff \| tree
2009-05-13	martinahansen	fixed symlink trouble	commit \| commitdiff \| tree
2009-05-13	martinahansen	git-svn-id: http://biopieces.googlecode.com/svn/trunk...	commit \| commitdiff \| tree
2009-05-13	martinahansen	git-svn-id: http://biopieces.googlecode.com/svn/trunk...	commit \| commitdiff \| tree
2009-05-13	martinahansen	moved all binaries and created symlinks instead	commit \| commitdiff \| tree
2009-05-12	martinahansen	split Biopieces.pm into BioRun.pm and Biopieces.pm	commit \| commitdiff \| tree
2009-05-12	martinahansen	changed wiki renderer	commit \| commitdiff \| tree
2008-12-17	martinahansen	fixed BED BUG	commit \| commitdiff \| tree
2008-12-11	martinahansen	lots of PSL related changes	commit \| commitdiff \| tree
2008-12-11	martinahansen	added exon capabilities to calc_fixedstep	commit \| commitdiff \| tree
2008-12-11	martinahansen	calc_fixedstep reverted to perl	commit \| commitdiff \| tree
2008-12-11	martinahansen	fixed carriage return bug in read_ucsc_config	commit \| commitdiff \| tree
2008-12-09	martinahansen	added splice to get_genome_seq	commit \| commitdiff \| tree
2008-12-09	martinahansen	fixed bug in remove_ucsc_tracks	commit \| commitdiff \| tree
2008-12-08	martinahansen	minor fixes	commit \| commitdiff \| tree
2008-12-08	martinahansen	added --check to a number of Biopieces	commit \| commitdiff \| tree
2008-12-08	martinahansen	reverting to BED lists	commit \| commitdiff \| tree
2008-12-08	martinahansen	changed BED.pm from list to hash	commit \| commitdiff \| tree
2008-12-08	martinahansen	made check_bed optional	commit \| commitdiff \| tree
2008-12-05	martinahansen	fixed CHR_BEG=0 bug	commit \| commitdiff \| tree
2008-12-05	martinahansen	changed barray from ushort to uint	commit \| commitdiff \| tree
2008-12-05	martinahansen	added bed2tag_contigs as backend to assemble_tag_contigs	commit \| commitdiff \| tree
2008-12-05	martinahansen	added bed2tag_contigs.c	commit \| commitdiff \| tree
2008-12-05	martinahansen	added bed2fixedstep.c as backend to calc_fixedstep	commit \| commitdiff \| tree
2008-12-05	martinahansen	fixed bed2fixedstep.c	commit \| commitdiff \| tree
2008-12-04	martinahansen	added python code	commit \| commitdiff \| tree
2008-12-04	martinahansen	added bed2fixedstep.c	commit \| commitdiff \| tree
2008-11-30	martinahansen	added barray.c and cleaned hash.c	commit \| commitdiff \| tree
2008-11-28	martinahansen	removed GIW2008 poster to docs and added to featured...	commit \| commitdiff \| tree
2008-11-28	martinahansen	added GIW2008 poster to docs	commit \| commitdiff \| tree
2008-11-27	martinahansen	added c power to calc_fixedstep	commit \| commitdiff \| tree
2008-11-24	martinahansen	fixed bugs in calc_fixedstep	commit \| commitdiff \| tree
2008-11-24	martinahansen	fixed bugs in assemble_tag_contigs	commit \| commitdiff \| tree
2008-11-24	martinahansen	major code upgrade 1	commit \| commitdiff \| tree
2008-11-21	martinahansen	fixed bug in compute	commit \| commitdiff \| tree
2008-11-18	martinahansen	doc update	commit \| commitdiff \| tree
2008-11-18	martinahansen	clean up	commit \| commitdiff \| tree
2008-11-13	martinahansen	added -c switch to write_bed	commit \| commitdiff \| tree
2008-11-11	martinahansen	added ucscMakeTracks -b run to remove_ucsc_tracks	commit \| commitdiff \| tree
2008-11-11	martinahansen	finished remove_ucsc_tracks	commit \| commitdiff \| tree
2008-11-11	martinahansen	fix date and time in ucsc config	commit \| commitdiff \| tree
2008-11-11	martinahansen	added remove_ucsc_tracks	commit \| commitdiff \| tree
2008-11-11	martinahansen	added -t to remove_mysql_tables	commit \| commitdiff \| tree
2008-11-11	martinahansen	swapped bedSort with bed_sort	commit \| commitdiff \| tree
2008-11-11	martinahansen	added mysql related Biopieces	commit \| commitdiff \| tree
2008-11-07	martinahansen	finished assemble_tag_contigs	commit \| commitdiff \| tree
2008-11-03	martinahansen	rewrote grab to get speed	commit \| commitdiff \| tree
2008-10-28	martinahansen	fixed compute	commit \| commitdiff \| tree
2008-10-28	martinahansen	fixed bug in compute and analyze_seq	commit \| commitdiff \| tree
2008-10-27	martinahansen	changed delimiter in REC_TYPE SOLID to ;	commit \| commitdiff \| tree
2008-10-02	martinahansen	added REC_TYPE to read_solid	commit \| commitdiff \| tree
2008-09-29	martinahansen	empty change to Seq.pm	commit \| commitdiff \| tree
2008-09-29	martinahansen	tada	commit \| commitdiff \| tree
2008-09-25	martinahansen	fixed ugly bug	commit \| commitdiff \| tree
2008-09-25	martinahansen	fixed rename bug	commit \| commitdiff \| tree
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