git.donarmstrong.com Git - biopieces.git/commit

]> git.donarmstrong.com Git - biopieces.git/commit

author	martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
	Wed, 13 May 2009 07:39:58 +0000 (07:39 +0000)
committer	martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
	Wed, 13 May 2009 07:39:58 +0000 (07:39 +0000)
commit	f7e5c1b54c562cc1b25fe419cacd4da9ac01f129
tree	046bfbeba1e5d30b51b2f488f758ecd55ee3501b	tree \| snapshot
parent	c32b13419ca8e524a5c98869048d0be670ee76d0	commit \| diff

moved all binaries and created symlinks instead

git-svn-id: http://biopieces.googlecode.com/svn/trunk@373 74ccb610-7750-0410-82ae-013aeee3265d

198 files changed:

bp_bin/00README		diff \| blob \| history
bp_bin/add_ident	[changed from file to symlink]	diff \| blob \| history
bp_bin/align_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/analyze_bed	[changed from file to symlink]	diff \| blob \| history
bp_bin/analyze_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/analyze_tags	[changed from file to symlink]	diff \| blob \| history
bp_bin/analyze_vals	[changed from file to symlink]	diff \| blob \| history
bp_bin/assemble_tag_contigs	[changed from file to symlink]	diff \| blob \| history
bp_bin/blast_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/blat_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/calc_bit_scores	[changed from file to symlink]	diff \| blob \| history
bp_bin/calc_fixedstep	[changed from file to symlink]	diff \| blob \| history
bp_bin/complement_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/complexity_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/compute	[changed from file to symlink]	diff \| blob \| history
bp_bin/count_records	[changed from file to symlink]	diff \| blob \| history
bp_bin/count_vals	[changed from file to symlink]	diff \| blob \| history
bp_bin/create_blast_db	[changed from file to symlink]	diff \| blob \| history
bp_bin/create_vmatch_index	[changed from file to symlink]	diff \| blob \| history
bp_bin/create_weight_matrix	[changed from file to symlink]	diff \| blob \| history
bp_bin/extract_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/flip_tab	[changed from file to symlink]	diff \| blob \| history
bp_bin/fold_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/format_genome	[changed from file to symlink]	diff \| blob \| history
bp_bin/get_genome_align	[changed from file to symlink]	diff \| blob \| history
bp_bin/get_genome_phastcons	[changed from file to symlink]	diff \| blob \| history
bp_bin/get_genome_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/grab	[changed from file to symlink]	diff \| blob \| history
bp_bin/head_records	[changed from file to symlink]	diff \| blob \| history
bp_bin/invert_align	[changed from file to symlink]	diff \| blob \| history
bp_bin/length_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/length_vals	[changed from file to symlink]	diff \| blob \| history
bp_bin/list_biopieces	[changed from file to symlink]	diff \| blob \| history
bp_bin/list_genomes	[changed from file to symlink]	diff \| blob \| history
bp_bin/match_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/max_vals	[changed from file to symlink]	diff \| blob \| history
bp_bin/mean_vals	[changed from file to symlink]	diff \| blob \| history
bp_bin/median_vals	[changed from file to symlink]	diff \| blob \| history
bp_bin/merge_records	[changed from file to symlink]	diff \| blob \| history
bp_bin/merge_vals	[changed from file to symlink]	diff \| blob \| history
bp_bin/min_vals	[changed from file to symlink]	diff \| blob \| history
bp_bin/oligo_freq	[changed from file to symlink]	diff \| blob \| history
bp_bin/patscan_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/plot_chrdist	[changed from file to symlink]	diff \| blob \| history
bp_bin/plot_histogram	[changed from file to symlink]	diff \| blob \| history
bp_bin/plot_karyogram	[changed from file to symlink]	diff \| blob \| history
bp_bin/plot_lendist	[changed from file to symlink]	diff \| blob \| history
bp_bin/plot_matches	[changed from file to symlink]	diff \| blob \| history
bp_bin/plot_phastcons_profiles	[changed from file to symlink]	diff \| blob \| history
bp_bin/plot_seqlogo	[changed from file to symlink]	diff \| blob \| history
bp_bin/print_usage	[changed from file to symlink]	diff \| blob \| history
bp_bin/random_records	[changed from file to symlink]	diff \| blob \| history
bp_bin/read_2bit	[changed from file to symlink]	diff \| blob \| history
bp_bin/read_bed	[changed from file to symlink]	diff \| blob \| history
bp_bin/read_blast_tab	[changed from file to symlink]	diff \| blob \| history
bp_bin/read_embl	[changed from file to symlink]	diff \| blob \| history
bp_bin/read_fasta	[changed from file to symlink]	diff \| blob \| history
bp_bin/read_fixedstep	[changed from file to symlink]	diff \| blob \| history
bp_bin/read_gff	[changed from file to symlink]	diff \| blob \| history
bp_bin/read_mysql	[changed from file to symlink]	diff \| blob \| history
bp_bin/read_phastcons	[changed from file to symlink]	diff \| blob \| history
bp_bin/read_psl	[changed from file to symlink]	diff \| blob \| history
bp_bin/read_soft	[changed from file to symlink]	diff \| blob \| history
bp_bin/read_solexa	[changed from file to symlink]	diff \| blob \| history
bp_bin/read_solid	[changed from file to symlink]	diff \| blob \| history
bp_bin/read_stockholm	[changed from file to symlink]	diff \| blob \| history
bp_bin/read_tab	[changed from file to symlink]	diff \| blob \| history
bp_bin/read_ucsc_config	[changed from file to symlink]	diff \| blob \| history
bp_bin/remove_adaptor	[changed from file to symlink]	diff \| blob \| history
bp_bin/remove_indels	[changed from file to symlink]	diff \| blob \| history
bp_bin/remove_keys	[changed from file to symlink]	diff \| blob \| history
bp_bin/remove_mysql_tables	[changed from file to symlink]	diff \| blob \| history
bp_bin/remove_ucsc_tracks	[changed from file to symlink]	diff \| blob \| history
bp_bin/rename_keys	[changed from file to symlink]	diff \| blob \| history
bp_bin/reverse_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/shuffle_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/soap_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/sort_records	[changed from file to symlink]	diff \| blob \| history
bp_bin/split_bed	[changed from file to symlink]	diff \| blob \| history
bp_bin/split_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/sum_vals	[changed from file to symlink]	diff \| blob \| history
bp_bin/tile_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/translate_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/transliterate_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/transliterate_vals	[changed from file to symlink]	diff \| blob \| history
bp_bin/uniq_vals	[changed from file to symlink]	diff \| blob \| history
bp_bin/upload_to_ucsc	[changed from file to symlink]	diff \| blob \| history
bp_bin/uppercase_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/vmatch_seq	[changed from file to symlink]	diff \| blob \| history
bp_bin/write_2bit	[changed from file to symlink]	diff \| blob \| history
bp_bin/write_align	[changed from file to symlink]	diff \| blob \| history
bp_bin/write_bed	[changed from file to symlink]	diff \| blob \| history
bp_bin/write_blast	[changed from file to symlink]	diff \| blob \| history
bp_bin/write_fasta	[changed from file to symlink]	diff \| blob \| history
bp_bin/write_fixedstep	[changed from file to symlink]	diff \| blob \| history
bp_bin/write_psl	[changed from file to symlink]	diff \| blob \| history
bp_bin/write_solid	[changed from file to symlink]	diff \| blob \| history
bp_bin/write_tab	[changed from file to symlink]	diff \| blob \| history
bp_bin/write_ucsc_config	[changed from file to symlink]	diff \| blob \| history
code_perl/Maasha/bin/add_ident	[new file with mode: 0755]	blob
code_perl/Maasha/bin/align_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/analyze_bed	[new file with mode: 0755]	blob
code_perl/Maasha/bin/analyze_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/analyze_tags	[new file with mode: 0755]	blob
code_perl/Maasha/bin/analyze_vals	[new file with mode: 0755]	blob
code_perl/Maasha/bin/assemble_tag_contigs	[new file with mode: 0755]	blob
code_perl/Maasha/bin/blast_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/blat_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/calc_bit_scores	[new file with mode: 0755]	blob
code_perl/Maasha/bin/calc_fixedstep	[new file with mode: 0755]	blob
code_perl/Maasha/bin/complement_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/complexity_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/compute	[new file with mode: 0755]	blob
code_perl/Maasha/bin/count_records	[new file with mode: 0755]	blob
code_perl/Maasha/bin/count_vals	[new file with mode: 0755]	blob
code_perl/Maasha/bin/create_blast_db	[new file with mode: 0755]	blob
code_perl/Maasha/bin/create_vmatch_index	[new file with mode: 0755]	blob
code_perl/Maasha/bin/create_weight_matrix	[new file with mode: 0755]	blob
code_perl/Maasha/bin/extract_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/flip_tab	[new file with mode: 0755]	blob
code_perl/Maasha/bin/fold_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/format_genome	[new file with mode: 0755]	blob
code_perl/Maasha/bin/get_genome_align	[new file with mode: 0755]	blob
code_perl/Maasha/bin/get_genome_phastcons	[new file with mode: 0755]	blob
code_perl/Maasha/bin/get_genome_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/grab	[new file with mode: 0755]	blob
code_perl/Maasha/bin/head_records	[new file with mode: 0755]	blob
code_perl/Maasha/bin/invert_align	[new file with mode: 0755]	blob
code_perl/Maasha/bin/length_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/length_vals	[new file with mode: 0755]	blob
code_perl/Maasha/bin/list_biopieces	[new file with mode: 0755]	blob
code_perl/Maasha/bin/list_genomes	[new file with mode: 0755]	blob
code_perl/Maasha/bin/match_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/max_vals	[new file with mode: 0755]	blob
code_perl/Maasha/bin/mean_vals	[new file with mode: 0755]	blob
code_perl/Maasha/bin/median_vals	[new file with mode: 0755]	blob
code_perl/Maasha/bin/merge_records	[new file with mode: 0755]	blob
code_perl/Maasha/bin/merge_vals	[new file with mode: 0755]	blob
code_perl/Maasha/bin/min_vals	[new file with mode: 0755]	blob
code_perl/Maasha/bin/oligo_freq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/patscan_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/plot_chrdist	[new file with mode: 0755]	blob
code_perl/Maasha/bin/plot_histogram	[new file with mode: 0755]	blob
code_perl/Maasha/bin/plot_karyogram	[new file with mode: 0755]	blob
code_perl/Maasha/bin/plot_lendist	[new file with mode: 0755]	blob
code_perl/Maasha/bin/plot_matches	[new file with mode: 0755]	blob
code_perl/Maasha/bin/plot_phastcons_profiles	[new file with mode: 0755]	blob
code_perl/Maasha/bin/plot_seqlogo	[new file with mode: 0755]	blob
code_perl/Maasha/bin/print_usage	[new file with mode: 0755]	blob
code_perl/Maasha/bin/random_records	[new file with mode: 0755]	blob
code_perl/Maasha/bin/read_2bit	[new file with mode: 0755]	blob
code_perl/Maasha/bin/read_bed	[new file with mode: 0755]	blob
code_perl/Maasha/bin/read_blast_tab	[new file with mode: 0755]	blob
code_perl/Maasha/bin/read_embl	[new file with mode: 0755]	blob
code_perl/Maasha/bin/read_fasta	[new file with mode: 0755]	blob
code_perl/Maasha/bin/read_fixedstep	[new file with mode: 0755]	blob
code_perl/Maasha/bin/read_gff	[new file with mode: 0755]	blob
code_perl/Maasha/bin/read_mysql	[new file with mode: 0755]	blob
code_perl/Maasha/bin/read_phastcons	[new file with mode: 0755]	blob
code_perl/Maasha/bin/read_psl	[new file with mode: 0755]	blob
code_perl/Maasha/bin/read_soft	[new file with mode: 0755]	blob
code_perl/Maasha/bin/read_solexa	[new file with mode: 0755]	blob
code_perl/Maasha/bin/read_solid	[new file with mode: 0755]	blob
code_perl/Maasha/bin/read_stockholm	[new file with mode: 0755]	blob
code_perl/Maasha/bin/read_tab	[new file with mode: 0755]	blob
code_perl/Maasha/bin/read_ucsc_config	[new file with mode: 0755]	blob
code_perl/Maasha/bin/remove_adaptor	[new file with mode: 0755]	blob
code_perl/Maasha/bin/remove_indels	[new file with mode: 0755]	blob
code_perl/Maasha/bin/remove_keys	[new file with mode: 0755]	blob
code_perl/Maasha/bin/remove_mysql_tables	[new file with mode: 0755]	blob
code_perl/Maasha/bin/remove_ucsc_tracks	[new file with mode: 0644]	blob
code_perl/Maasha/bin/rename_keys	[new file with mode: 0755]	blob
code_perl/Maasha/bin/reverse_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/shuffle_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/soap_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/sort_records	[new file with mode: 0755]	blob
code_perl/Maasha/bin/split_bed	[new file with mode: 0755]	blob
code_perl/Maasha/bin/split_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/sum_vals	[new file with mode: 0755]	blob
code_perl/Maasha/bin/tile_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/translate_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/transliterate_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/transliterate_vals	[new file with mode: 0755]	blob
code_perl/Maasha/bin/uniq_vals	[new file with mode: 0755]	blob
code_perl/Maasha/bin/upload_to_ucsc	[new file with mode: 0755]	blob
code_perl/Maasha/bin/uppercase_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/vmatch_seq	[new file with mode: 0755]	blob
code_perl/Maasha/bin/write_2bit	[new file with mode: 0755]	blob
code_perl/Maasha/bin/write_align	[new file with mode: 0755]	blob
code_perl/Maasha/bin/write_bed	[new file with mode: 0755]	blob
code_perl/Maasha/bin/write_blast	[new file with mode: 0755]	blob
code_perl/Maasha/bin/write_fasta	[new file with mode: 0755]	blob
code_perl/Maasha/bin/write_fixedstep	[new file with mode: 0755]	blob
code_perl/Maasha/bin/write_psl	[new file with mode: 0755]	blob
code_perl/Maasha/bin/write_solid	[new file with mode: 0755]	blob
code_perl/Maasha/bin/write_tab	[new file with mode: 0755]	blob
code_perl/Maasha/bin/write_ucsc_config	[new file with mode: 0755]	blob
code_python/Cjung/Args.pyc		diff \| blob \| history

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