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martinahansen [Thu, 21 Aug 2008 07:50:28 +0000 (07:50 +0000)]
finished c fasta parser
git-svn-id: http://biopieces.googlecode.com/svn/trunk@216
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martinahansen [Thu, 21 Aug 2008 04:01:58 +0000 (04:01 +0000)]
fixed format_genome
git-svn-id: http://biopieces.googlecode.com/svn/trunk@215
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martinahansen [Thu, 21 Aug 2008 03:55:34 +0000 (03:55 +0000)]
fixed bug in vmatch_index
git-svn-id: http://biopieces.googlecode.com/svn/trunk@214
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martinahansen [Thu, 21 Aug 2008 00:28:06 +0000 (00:28 +0000)]
fixed %d->%f for log10 in upload_to_ucsc
git-svn-id: http://biopieces.googlecode.com/svn/trunk@213
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martinahansen [Thu, 21 Aug 2008 00:27:09 +0000 (00:27 +0000)]
more updates of c and fixes to upload_to_ucsc
git-svn-id: http://biopieces.googlecode.com/svn/trunk@212
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martinahansen [Mon, 18 Aug 2008 09:02:40 +0000 (09:02 +0000)]
another c code upgrade
git-svn-id: http://biopieces.googlecode.com/svn/trunk@210
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martinahansen [Thu, 14 Aug 2008 08:35:21 +0000 (08:35 +0000)]
updated read_solexa
git-svn-id: http://biopieces.googlecode.com/svn/trunk@208
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martinahansen [Thu, 14 Aug 2008 06:03:44 +0000 (06:03 +0000)]
unit test of mem.c done
git-svn-id: http://biopieces.googlecode.com/svn/trunk@207
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martinahansen [Wed, 13 Aug 2008 23:35:20 +0000 (23:35 +0000)]
update of c libs
git-svn-id: http://biopieces.googlecode.com/svn/trunk@206
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martinahansen [Tue, 5 Aug 2008 00:22:07 +0000 (00:22 +0000)]
fixing up c code
git-svn-id: http://biopieces.googlecode.com/svn/trunk@203
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martinahansen [Fri, 1 Aug 2008 04:56:16 +0000 (04:56 +0000)]
changed result key of count_records
git-svn-id: http://biopieces.googlecode.com/svn/trunk@202
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martinahansen [Tue, 29 Jul 2008 07:45:46 +0000 (07:45 +0000)]
reverted code for format_genome in order to make vmatch_seq work correctly
git-svn-id: http://biopieces.googlecode.com/svn/trunk@200
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martinahansen [Tue, 29 Jul 2008 07:07:46 +0000 (07:07 +0000)]
correcting bug in Match.pm
git-svn-id: http://biopieces.googlecode.com/svn/trunk@199
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martinahansen [Tue, 29 Jul 2008 02:21:10 +0000 (02:21 +0000)]
finished biopiece merge_records
git-svn-id: http://biopieces.googlecode.com/svn/trunk@198
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martinahansen [Mon, 28 Jul 2008 12:23:23 +0000 (12:23 +0000)]
added new biopiece merge_records
git-svn-id: http://biopieces.googlecode.com/svn/trunk@197
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martinahansen [Fri, 25 Jul 2008 05:00:01 +0000 (05:00 +0000)]
fixed zero entry tmp file bug in soap_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@196
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martinahansen [Fri, 25 Jul 2008 04:21:03 +0000 (04:21 +0000)]
fixed another annoying bug in clean_tmp()
git-svn-id: http://biopieces.googlecode.com/svn/trunk@195
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martinahansen [Fri, 25 Jul 2008 03:06:16 +0000 (03:06 +0000)]
corrected bug in clean tmp to deal with permision problem
git-svn-id: http://biopieces.googlecode.com/svn/trunk@194
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martinahansen [Fri, 25 Jul 2008 01:12:54 +0000 (01:12 +0000)]
changed error output to fit on screen
git-svn-id: http://biopieces.googlecode.com/svn/trunk@193
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martinahansen [Thu, 24 Jul 2008 07:49:26 +0000 (07:49 +0000)]
added seed_size to soap_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@192
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martinahansen [Thu, 24 Jul 2008 06:42:45 +0000 (06:42 +0000)]
corrected ugly bug
git-svn-id: http://biopieces.googlecode.com/svn/trunk@190
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martinahansen [Thu, 24 Jul 2008 06:27:53 +0000 (06:27 +0000)]
fixed cleanup of temporary files
git-svn-id: http://biopieces.googlecode.com/svn/trunk@189
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martinahansen [Wed, 23 Jul 2008 02:11:07 +0000 (02:11 +0000)]
begin of status update
git-svn-id: http://biopieces.googlecode.com/svn/trunk@188
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martinahansen [Tue, 22 Jul 2008 01:25:07 +0000 (01:25 +0000)]
added record2fasta to allow for aliasing of SEQ_NAME to Q_ID or S_ID
git-svn-id: http://biopieces.googlecode.com/svn/trunk@187
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martinahansen [Mon, 21 Jul 2008 23:42:56 +0000 (23:42 +0000)]
updated upload_to_ucsc wiki and added a secure free to c code
git-svn-id: http://biopieces.googlecode.com/svn/trunk@186
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martinahansen [Mon, 21 Jul 2008 06:58:01 +0000 (06:58 +0000)]
fixed ugly bug in get_record
git-svn-id: http://biopieces.googlecode.com/svn/trunk@184
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martinahansen [Mon, 21 Jul 2008 06:31:00 +0000 (06:31 +0000)]
corrected an ugly bug in get_record
git-svn-id: http://biopieces.googlecode.com/svn/trunk@183
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martinahansen [Mon, 21 Jul 2008 05:57:41 +0000 (05:57 +0000)]
more soap_seq debugging
git-svn-id: http://biopieces.googlecode.com/svn/trunk@182
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martinahansen [Mon, 21 Jul 2008 05:46:27 +0000 (05:46 +0000)]
debugging soap_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@181
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martinahansen [Mon, 21 Jul 2008 05:17:55 +0000 (05:17 +0000)]
added soap_seq
git-svn-id: http://biopieces.googlecode.com/svn/trunk@180
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martinahansen [Mon, 21 Jul 2008 03:50:48 +0000 (03:50 +0000)]
changed wib dir from BP_DATA to ~/ucsc
git-svn-id: http://biopieces.googlecode.com/svn/trunk@178
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martinahansen [Mon, 21 Jul 2008 01:08:14 +0000 (01:08 +0000)]
updated list_genomes wiki and bashrc
git-svn-id: http://biopieces.googlecode.com/svn/trunk@177
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martinahansen [Mon, 21 Jul 2008 00:15:36 +0000 (00:15 +0000)]
fixed local and global logging
git-svn-id: http://biopieces.googlecode.com/svn/trunk@174
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martinahansen [Sun, 20 Jul 2008 23:50:53 +0000 (23:50 +0000)]
added a variable argument list example to c scr
git-svn-id: http://biopieces.googlecode.com/svn/trunk@173
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martinahansen [Sun, 20 Jul 2008 01:11:58 +0000 (01:11 +0000)]
cleaning c source dir
git-svn-id: http://biopieces.googlecode.com/svn/trunk@172
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martinahansen [Thu, 17 Jul 2008 04:21:05 +0000 (04:21 +0000)]
fixing bashrc
git-svn-id: http://biopieces.googlecode.com/svn/trunk@170
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martinahansen [Thu, 17 Jul 2008 04:20:43 +0000 (04:20 +0000)]
fixing bashrc
git-svn-id: http://biopieces.googlecode.com/svn/trunk@169
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martinahansen [Thu, 17 Jul 2008 04:11:13 +0000 (04:11 +0000)]
removed bp_usage dir from source trunk (should be root of wiki trunk)
git-svn-id: http://biopieces.googlecode.com/svn/trunk@168
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martinahansen [Thu, 17 Jul 2008 03:23:34 +0000 (03:23 +0000)]
unmessing wiki dir
git-svn-id: http://biopieces.googlecode.com/svn/trunk@165
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martinahansen [Thu, 17 Jul 2008 02:56:24 +0000 (02:56 +0000)]
cleaning bp_usage
git-svn-id: http://biopieces.googlecode.com/svn/trunk@163
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martinahansen [Thu, 17 Jul 2008 02:55:19 +0000 (02:55 +0000)]
cleaning bp_usage
git-svn-id: http://biopieces.googlecode.com/svn/trunk@162
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martinahansen [Thu, 17 Jul 2008 02:53:58 +0000 (02:53 +0000)]
cleaning bp_usage
git-svn-id: http://biopieces.googlecode.com/svn/trunk@161
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martinahansen [Thu, 17 Jul 2008 02:50:35 +0000 (02:50 +0000)]
format_genome fix
git-svn-id: http://biopieces.googlecode.com/svn/trunk@160
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martinahansen [Thu, 17 Jul 2008 02:38:15 +0000 (02:38 +0000)]
removed log directory
git-svn-id: http://biopieces.googlecode.com/svn/trunk@159
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martinahansen [Mon, 14 Jul 2008 08:32:34 +0000 (08:32 +0000)]
added phastcons to format_genome
git-svn-id: http://biopieces.googlecode.com/svn/trunk@149
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martinahansen [Mon, 14 Jul 2008 06:48:15 +0000 (06:48 +0000)]
removed create_fixedstep_index
git-svn-id: http://biopieces.googlecode.com/svn/trunk@148
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martinahansen [Mon, 14 Jul 2008 06:39:05 +0000 (06:39 +0000)]
added create_fixedstep_index
git-svn-id: http://biopieces.googlecode.com/svn/trunk@147
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martinahansen [Mon, 14 Jul 2008 05:40:10 +0000 (05:40 +0000)]
added write_fixedstep
git-svn-id: http://biopieces.googlecode.com/svn/trunk@146
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martinahansen [Mon, 14 Jul 2008 05:04:20 +0000 (05:04 +0000)]
added read_fixedstep
git-svn-id: http://biopieces.googlecode.com/svn/trunk@144
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martinahansen [Thu, 10 Jul 2008 07:05:11 +0000 (07:05 +0000)]
fixed all defects from bug list
git-svn-id: http://biopieces.googlecode.com/svn/trunk@142
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martinahansen [Thu, 10 Jul 2008 06:47:48 +0000 (06:47 +0000)]
added format_genome and list_genomes
git-svn-id: http://biopieces.googlecode.com/svn/trunk@141
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martinahansen [Wed, 9 Jul 2008 11:02:33 +0000 (11:02 +0000)]
fixed print_usage
git-svn-id: http://biopieces.googlecode.com/svn/trunk@140
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martinahansen [Wed, 9 Jul 2008 07:34:56 +0000 (07:34 +0000)]
fixed print_usage
git-svn-id: http://biopieces.googlecode.com/svn/trunk@135
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martinahansen [Wed, 9 Jul 2008 06:12:51 +0000 (06:12 +0000)]
added --help
git-svn-id: http://biopieces.googlecode.com/svn/trunk@134
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martinahansen [Wed, 9 Jul 2008 04:53:08 +0000 (04:53 +0000)]
removed & from all Perl Modules
git-svn-id: http://biopieces.googlecode.com/svn/trunk@133
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martinahansen [Tue, 8 Jul 2008 03:39:49 +0000 (03:39 +0000)]
added disable internal link ! to Gwiki
git-svn-id: http://biopieces.googlecode.com/svn/trunk@121
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martinahansen [Wed, 2 Jul 2008 05:10:42 +0000 (05:10 +0000)]
even more wikis
git-svn-id: http://biopieces.googlecode.com/svn/trunk@100
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martinahansen [Tue, 1 Jul 2008 08:34:26 +0000 (08:34 +0000)]
more wikis
git-svn-id: http://biopieces.googlecode.com/svn/trunk@98
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martinahansen [Tue, 1 Jul 2008 08:34:15 +0000 (08:34 +0000)]
more wikis
git-svn-id: http://biopieces.googlecode.com/svn/trunk@97
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martinahansen [Tue, 1 Jul 2008 07:36:05 +0000 (07:36 +0000)]
more wikis
git-svn-id: http://biopieces.googlecode.com/svn/trunk@95
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martinahansen [Tue, 1 Jul 2008 06:23:56 +0000 (06:23 +0000)]
more wikis
git-svn-id: http://biopieces.googlecode.com/svn/trunk@93
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martinahansen [Tue, 1 Jul 2008 04:48:23 +0000 (04:48 +0000)]
more wikis
git-svn-id: http://biopieces.googlecode.com/svn/trunk@91
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martinahansen [Tue, 1 Jul 2008 02:56:37 +0000 (02:56 +0000)]
added tile_seq.wiki
git-svn-id: http://biopieces.googlecode.com/svn/trunk@89
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martinahansen [Tue, 1 Jul 2008 00:56:10 +0000 (00:56 +0000)]
update wiki
git-svn-id: http://biopieces.googlecode.com/svn/trunk@87
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martinahansen [Tue, 1 Jul 2008 00:32:18 +0000 (00:32 +0000)]
update wiki
git-svn-id: http://biopieces.googlecode.com/svn/trunk@85
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martinahansen [Tue, 1 Jul 2008 00:17:38 +0000 (00:17 +0000)]
updating add_ident.wiki
git-svn-id: http://biopieces.googlecode.com/svn/trunk@83
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martinahansen [Tue, 1 Jul 2008 00:11:44 +0000 (00:11 +0000)]
updating write_fasta.wiki
git-svn-id: http://biopieces.googlecode.com/svn/trunk@80
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martinahansen [Mon, 30 Jun 2008 12:11:05 +0000 (12:11 +0000)]
zzz
git-svn-id: http://biopieces.googlecode.com/svn/trunk@79
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martinahansen [Mon, 30 Jun 2008 12:10:47 +0000 (12:10 +0000)]
zzz
git-svn-id: http://biopieces.googlecode.com/svn/trunk@78
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martinahansen [Mon, 30 Jun 2008 11:07:26 +0000 (11:07 +0000)]
add ident
git-svn-id: http://biopieces.googlecode.com/svn/trunk@76
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martinahansen [Mon, 30 Jun 2008 07:31:30 +0000 (07:31 +0000)]
removing old crap
git-svn-id: http://biopieces.googlecode.com/svn/trunk@73
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martinahansen [Mon, 30 Jun 2008 07:30:41 +0000 (07:30 +0000)]
removing old crap
git-svn-id: http://biopieces.googlecode.com/svn/trunk@72
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martinahansen [Mon, 30 Jun 2008 07:21:24 +0000 (07:21 +0000)]
wiki update to trunk
git-svn-id: http://biopieces.googlecode.com/svn/trunk@68
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martinahansen [Fri, 27 Jun 2008 05:29:57 +0000 (05:29 +0000)]
new wiki usage test
git-svn-id: http://biopieces.googlecode.com/svn/trunk@54
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martinahansen [Thu, 26 Jun 2008 06:57:25 +0000 (06:57 +0000)]
more renaming
git-svn-id: http://biopieces.googlecode.com/svn/trunk@27
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martinahansen [Thu, 26 Jun 2008 06:30:38 +0000 (06:30 +0000)]
this will probably break
git-svn-id: http://biopieces.googlecode.com/svn/trunk@24
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martinahansen [Thu, 26 Jun 2008 06:11:11 +0000 (06:11 +0000)]
restructure
git-svn-id: http://biopieces.googlecode.com/svn/trunk@23
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martinahansen [Thu, 26 Jun 2008 04:49:20 +0000 (04:49 +0000)]
renamed README files to 00README for properly sorted view
git-svn-id: http://biopieces.googlecode.com/svn/trunk@22
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martinahansen [Thu, 26 Jun 2008 01:33:55 +0000 (01:33 +0000)]
Here we go
git-svn-id: http://biopieces.googlecode.com/svn/trunk@5
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martinahansen [Thu, 26 Jun 2008 01:28:22 +0000 (01:28 +0000)]
test
git-svn-id: http://biopieces.googlecode.com/svn/trunk@4
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(no author) [Wed, 25 Jun 2008 05:36:58 +0000 (05:36 +0000)]
Initial directory structure.
git-svn-id: http://biopieces.googlecode.com/svn/trunk@1
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projects / biopieces.git / log