git.donarmstrong.com Git - biopieces.git/commit

]> git.donarmstrong.com Git - biopieces.git/commit

author	martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
	Thu, 26 Jun 2008 06:11:11 +0000 (06:11 +0000)
committer	martinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
	Thu, 26 Jun 2008 06:11:11 +0000 (06:11 +0000)
commit	f246d97ce9ddc906801ed22b4e79567dc8914c45
tree	407da51e24270075da80e99b671d363585cf8109	tree \| snapshot
parent	001e146db3c18234f34f3eddfe7197ffe79c7ba2	commit \| diff

restructure

git-svn-id: http://biopieces.googlecode.com/svn/trunk@23 74ccb610-7750-0410-82ae-013aeee3265d

174 files changed:

INSTALL		diff \| blob \| history
bp_bin/add_ident	[new file with mode: 0755]	blob
bp_bin/align_seq	[new file with mode: 0755]	blob
bp_bin/analyze_bed	[new file with mode: 0755]	blob
bp_bin/analyze_seq	[new file with mode: 0755]	blob
bp_bin/analyze_tags	[new file with mode: 0755]	blob
bp_bin/analyze_vals	[new file with mode: 0755]	blob
bp_bin/blast_seq	[new file with mode: 0755]	blob
bp_bin/blat_seq	[new file with mode: 0755]	blob
bp_bin/calc_bit_scores	[new file with mode: 0755]	blob
bp_bin/complement_seq	[new file with mode: 0755]	blob
bp_bin/complexity_seq	[new file with mode: 0755]	blob
bp_bin/compute	[new file with mode: 0755]	blob
bp_bin/count_records	[new file with mode: 0755]	blob
bp_bin/count_vals	[new file with mode: 0755]	blob
bp_bin/create_blast_db	[new file with mode: 0755]	blob
bp_bin/create_vmatch_index	[new file with mode: 0755]	blob
bp_bin/create_weight_matrix	[new file with mode: 0755]	blob
bp_bin/extract_seq	[new file with mode: 0755]	blob
bp_bin/flip_tab	[new file with mode: 0755]	blob
bp_bin/fold_seq	[new file with mode: 0755]	blob
bp_bin/get_genome_align	[new file with mode: 0755]	blob
bp_bin/get_genome_phastcons	[new file with mode: 0755]	blob
bp_bin/get_genome_seq	[new file with mode: 0755]	blob
bp_bin/grab	[new file with mode: 0755]	blob
bp_bin/head_records	[new file with mode: 0755]	blob
bp_bin/invert_align	[new file with mode: 0755]	blob
bp_bin/length_seq	[new file with mode: 0755]	blob
bp_bin/length_vals	[new file with mode: 0755]	blob
bp_bin/list_biotools	[new file with mode: 0755]	blob
bp_bin/match_seq	[new file with mode: 0755]	blob
bp_bin/max_vals	[new file with mode: 0755]	blob
bp_bin/mean_vals	[new file with mode: 0755]	blob
bp_bin/median_vals	[new file with mode: 0755]	blob
bp_bin/merge_vals	[new file with mode: 0755]	blob
bp_bin/min_vals	[new file with mode: 0755]	blob
bp_bin/oligo_freq	[new file with mode: 0755]	blob
bp_bin/patscan_seq	[new file with mode: 0755]	blob
bp_bin/plot_chrdist	[new file with mode: 0755]	blob
bp_bin/plot_histogram	[new file with mode: 0755]	blob
bp_bin/plot_karyogram	[new file with mode: 0755]	blob
bp_bin/plot_lendist	[new file with mode: 0755]	blob
bp_bin/plot_matches	[new file with mode: 0755]	blob
bp_bin/plot_phastcons_profiles	[new file with mode: 0755]	blob
bp_bin/plot_seqlogo	[new file with mode: 0755]	blob
bp_bin/print_usage	[new file with mode: 0755]	blob
bp_bin/random_records	[new file with mode: 0755]	blob
bp_bin/read_2bit	[new file with mode: 0755]	blob
bp_bin/read_align	[new file with mode: 0755]	blob
bp_bin/read_bed	[new file with mode: 0755]	blob
bp_bin/read_blast_tab	[new file with mode: 0755]	blob
bp_bin/read_embl	[new file with mode: 0755]	blob
bp_bin/read_fasta	[new file with mode: 0755]	blob
bp_bin/read_gff	[new file with mode: 0755]	blob
bp_bin/read_mysql	[new file with mode: 0755]	blob
bp_bin/read_phastcons	[new file with mode: 0755]	blob
bp_bin/read_psl	[new file with mode: 0755]	blob
bp_bin/read_soft	[new file with mode: 0755]	blob
bp_bin/read_solexa	[new file with mode: 0755]	blob
bp_bin/read_solid	[new file with mode: 0755]	blob
bp_bin/read_stockholm	[new file with mode: 0755]	blob
bp_bin/read_tab	[new file with mode: 0755]	blob
bp_bin/remove_indels	[new file with mode: 0755]	blob
bp_bin/remove_keys	[new file with mode: 0755]	blob
bp_bin/rename_keys	[new file with mode: 0755]	blob
bp_bin/reverse_seq	[new file with mode: 0755]	blob
bp_bin/shuffle_seq	[new file with mode: 0755]	blob
bp_bin/sort_records	[new file with mode: 0755]	blob
bp_bin/split_bed	[new file with mode: 0755]	blob
bp_bin/split_seq	[new file with mode: 0755]	blob
bp_bin/sum_vals	[new file with mode: 0755]	blob
bp_bin/tile_seq	[new file with mode: 0755]	blob
bp_bin/translate_seq	[new file with mode: 0755]	blob
bp_bin/transliterate_seq	[new file with mode: 0755]	blob
bp_bin/transliterate_vals	[new file with mode: 0755]	blob
bp_bin/uniq_vals	[new file with mode: 0755]	blob
bp_bin/upload_to_ucsc	[new file with mode: 0755]	blob
bp_bin/uppercase_seq	[new file with mode: 0755]	blob
bp_bin/vmatch_seq	[new file with mode: 0755]	blob
bp_bin/write_2bit	[new file with mode: 0755]	blob
bp_bin/write_align	[new file with mode: 0755]	blob
bp_bin/write_bed	[new file with mode: 0755]	blob
bp_bin/write_blast	[new file with mode: 0755]	blob
bp_bin/write_fasta	[new file with mode: 0755]	blob
bp_bin/write_psl	[new file with mode: 0755]	blob
bp_bin/write_solid	[new file with mode: 0755]	blob
bp_bin/write_tab	[new file with mode: 0755]	blob
bp_conf/bashrc		diff \| blob \| history
bp_scripts/add_ident	[deleted file]	blob \| history
bp_scripts/align_seq	[deleted file]	blob \| history
bp_scripts/analyze_bed	[deleted file]	blob \| history
bp_scripts/analyze_seq	[deleted file]	blob \| history
bp_scripts/analyze_tags	[deleted file]	blob \| history
bp_scripts/analyze_vals	[deleted file]	blob \| history
bp_scripts/blast_seq	[deleted file]	blob \| history
bp_scripts/blat_seq	[deleted file]	blob \| history
bp_scripts/calc_bit_scores	[deleted file]	blob \| history
bp_scripts/complement_seq	[deleted file]	blob \| history
bp_scripts/complexity_seq	[deleted file]	blob \| history
bp_scripts/compute	[deleted file]	blob \| history
bp_scripts/count_records	[deleted file]	blob \| history
bp_scripts/count_vals	[deleted file]	blob \| history
bp_scripts/create_blast_db	[deleted file]	blob \| history
bp_scripts/create_vmatch_index	[deleted file]	blob \| history
bp_scripts/create_weight_matrix	[deleted file]	blob \| history
bp_scripts/extract_seq	[deleted file]	blob \| history
bp_scripts/flip_tab	[deleted file]	blob \| history
bp_scripts/fold_seq	[deleted file]	blob \| history
bp_scripts/get_genome_align	[deleted file]	blob \| history
bp_scripts/get_genome_phastcons	[deleted file]	blob \| history
bp_scripts/get_genome_seq	[deleted file]	blob \| history
bp_scripts/grab	[deleted file]	blob \| history
bp_scripts/head_records	[deleted file]	blob \| history
bp_scripts/invert_align	[deleted file]	blob \| history
bp_scripts/length_seq	[deleted file]	blob \| history
bp_scripts/length_vals	[deleted file]	blob \| history
bp_scripts/list_biotools	[deleted file]	blob \| history
bp_scripts/match_seq	[deleted file]	blob \| history
bp_scripts/max_vals	[deleted file]	blob \| history
bp_scripts/mean_vals	[deleted file]	blob \| history
bp_scripts/median_vals	[deleted file]	blob \| history
bp_scripts/merge_vals	[deleted file]	blob \| history
bp_scripts/min_vals	[deleted file]	blob \| history
bp_scripts/oligo_freq	[deleted file]	blob \| history
bp_scripts/patscan_seq	[deleted file]	blob \| history
bp_scripts/plot_chrdist	[deleted file]	blob \| history
bp_scripts/plot_histogram	[deleted file]	blob \| history
bp_scripts/plot_karyogram	[deleted file]	blob \| history
bp_scripts/plot_lendist	[deleted file]	blob \| history
bp_scripts/plot_matches	[deleted file]	blob \| history
bp_scripts/plot_phastcons_profiles	[deleted file]	blob \| history
bp_scripts/plot_seqlogo	[deleted file]	blob \| history
bp_scripts/print_usage	[deleted file]	blob \| history
bp_scripts/random_records	[deleted file]	blob \| history
bp_scripts/read_2bit	[deleted file]	blob \| history
bp_scripts/read_align	[deleted file]	blob \| history
bp_scripts/read_bed	[deleted file]	blob \| history
bp_scripts/read_blast_tab	[deleted file]	blob \| history
bp_scripts/read_embl	[deleted file]	blob \| history
bp_scripts/read_fasta	[deleted file]	blob \| history
bp_scripts/read_gff	[deleted file]	blob \| history
bp_scripts/read_mysql	[deleted file]	blob \| history
bp_scripts/read_phastcons	[deleted file]	blob \| history
bp_scripts/read_psl	[deleted file]	blob \| history
bp_scripts/read_soft	[deleted file]	blob \| history
bp_scripts/read_solexa	[deleted file]	blob \| history
bp_scripts/read_solid	[deleted file]	blob \| history
bp_scripts/read_stockholm	[deleted file]	blob \| history
bp_scripts/read_tab	[deleted file]	blob \| history
bp_scripts/remove_indels	[deleted file]	blob \| history
bp_scripts/remove_keys	[deleted file]	blob \| history
bp_scripts/rename_keys	[deleted file]	blob \| history
bp_scripts/reverse_seq	[deleted file]	blob \| history
bp_scripts/shuffle_seq	[deleted file]	blob \| history
bp_scripts/sort_records	[deleted file]	blob \| history
bp_scripts/split_bed	[deleted file]	blob \| history
bp_scripts/split_seq	[deleted file]	blob \| history
bp_scripts/sum_vals	[deleted file]	blob \| history
bp_scripts/tile_seq	[deleted file]	blob \| history
bp_scripts/translate_seq	[deleted file]	blob \| history
bp_scripts/transliterate_seq	[deleted file]	blob \| history
bp_scripts/transliterate_vals	[deleted file]	blob \| history
bp_scripts/uniq_vals	[deleted file]	blob \| history
bp_scripts/upload_to_ucsc	[deleted file]	blob \| history
bp_scripts/uppercase_seq	[deleted file]	blob \| history
bp_scripts/vmatch_seq	[deleted file]	blob \| history
bp_scripts/write_2bit	[deleted file]	blob \| history
bp_scripts/write_align	[deleted file]	blob \| history
bp_scripts/write_bed	[deleted file]	blob \| history
bp_scripts/write_blast	[deleted file]	blob \| history
bp_scripts/write_fasta	[deleted file]	blob \| history
bp_scripts/write_psl	[deleted file]	blob \| history
bp_scripts/write_solid	[deleted file]	blob \| history
bp_scripts/write_tab	[deleted file]	blob \| history

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