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Here we go
authormartinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Thu, 26 Jun 2008 01:33:55 +0000 (01:33 +0000)
committermartinahansen <martinahansen@74ccb610-7750-0410-82ae-013aeee3265d>
Thu, 26 Jun 2008 01:33:55 +0000 (01:33 +0000)
commit54de880e571a403a6a67f83f1edbe222482a1de6
tree04479947c5764da94c5259b43a15a2f99d521fbftree | snapshot
parent1e9ad5a70a3bc1fe63701bd3c770dc8c053039dccommit | diff
Here we go

git-svn-id: http://biopieces.googlecode.com/svn/trunk@5 74ccb610-7750-0410-82ae-013aeee3265d
269 files changed:
INSTALL [new file with mode: 0644] blob
LICENCE [new file with mode: 0644] blob
bp_conf/README [new file with mode: 0644] blob
bp_conf/bashrc [new file with mode: 0644] blob
bp_data/README [new file with mode: 0644] blob
bp_data/human_cytobands.txt [new file with mode: 0644] blob
bp_data/mouse_cytobands.txt [new file with mode: 0644] blob
bp_doc/biopieces_cookbook.lyx [new file with mode: 0644] blob
bp_doc/biotools_cookbook.lyx [new file with mode: 0644] blob
bp_doc/biotools_cookbook.pdf [new file with mode: 0644] blob
bp_doc/biotools_cookbook.tex [new file with mode: 0644] blob
bp_doc/biotools_presentation.odp [new file with mode: 0644] blob
bp_doc/chrdist.pdf [new file with mode: 0644] blob
bp_doc/chrdist.ps [new file with mode: 0644] blob
bp_doc/chrdist_ascii.png [new file with mode: 0644] blob
bp_doc/dotplot.pdf [new file with mode: 0644] blob
bp_doc/dotplot.ps [new file with mode: 0644] blob
bp_doc/histogram.png [new file with mode: 0644] blob
bp_doc/karyogram.png [new file with mode: 0644] blob
bp_doc/karyogram.svg [new file with mode: 0644] blob
bp_doc/lendist.pdf [new file with mode: 0644] blob
bp_doc/lendist.ps [new file with mode: 0644] blob
bp_doc/lendist_ascii.png [new file with mode: 0644] blob
bp_doc/seqlogo.png [new file with mode: 0644] blob
bp_doc/seqlogo.svg [new file with mode: 0644] blob
bp_scripts/add_ident [new file with mode: 0755] blob
bp_scripts/align_seq [new file with mode: 0755] blob
bp_scripts/analyze_bed [new file with mode: 0755] blob
bp_scripts/analyze_seq [new file with mode: 0755] blob
bp_scripts/analyze_tags [new file with mode: 0755] blob
bp_scripts/analyze_vals [new file with mode: 0755] blob
bp_scripts/blast_seq [new file with mode: 0755] blob
bp_scripts/blat_seq [new file with mode: 0755] blob
bp_scripts/calc_bit_scores [new file with mode: 0755] blob
bp_scripts/complement_seq [new file with mode: 0755] blob
bp_scripts/complexity_seq [new file with mode: 0755] blob
bp_scripts/compute [new file with mode: 0755] blob
bp_scripts/count_records [new file with mode: 0755] blob
bp_scripts/count_vals [new file with mode: 0755] blob
bp_scripts/create_blast_db [new file with mode: 0755] blob
bp_scripts/create_vmatch_index [new file with mode: 0755] blob
bp_scripts/create_weight_matrix [new file with mode: 0755] blob
bp_scripts/extract_seq [new file with mode: 0755] blob
bp_scripts/flip_tab [new file with mode: 0755] blob
bp_scripts/fold_seq [new file with mode: 0755] blob
bp_scripts/get_genome_align [new file with mode: 0755] blob
bp_scripts/get_genome_phastcons [new file with mode: 0755] blob
bp_scripts/get_genome_seq [new file with mode: 0755] blob
bp_scripts/grab [new file with mode: 0755] blob
bp_scripts/head_records [new file with mode: 0755] blob
bp_scripts/invert_align [new file with mode: 0755] blob
bp_scripts/length_seq [new file with mode: 0755] blob
bp_scripts/length_vals [new file with mode: 0755] blob
bp_scripts/list_biotools [new file with mode: 0755] blob
bp_scripts/match_seq [new file with mode: 0755] blob
bp_scripts/max_vals [new file with mode: 0755] blob
bp_scripts/mean_vals [new file with mode: 0755] blob
bp_scripts/median_vals [new file with mode: 0755] blob
bp_scripts/merge_vals [new file with mode: 0755] blob
bp_scripts/min_vals [new file with mode: 0755] blob
bp_scripts/oligo_freq [new file with mode: 0755] blob
bp_scripts/patscan_seq [new file with mode: 0755] blob
bp_scripts/plot_chrdist [new file with mode: 0755] blob
bp_scripts/plot_histogram [new file with mode: 0755] blob
bp_scripts/plot_karyogram [new file with mode: 0755] blob
bp_scripts/plot_lendist [new file with mode: 0755] blob
bp_scripts/plot_matches [new file with mode: 0755] blob
bp_scripts/plot_phastcons_profiles [new file with mode: 0755] blob
bp_scripts/plot_seqlogo [new file with mode: 0755] blob
bp_scripts/print_usage [new file with mode: 0755] blob
bp_scripts/random_records [new file with mode: 0755] blob
bp_scripts/read_2bit [new file with mode: 0755] blob
bp_scripts/read_align [new file with mode: 0755] blob
bp_scripts/read_bed [new file with mode: 0755] blob
bp_scripts/read_blast_tab [new file with mode: 0755] blob
bp_scripts/read_embl [new file with mode: 0755] blob
bp_scripts/read_fasta [new file with mode: 0755] blob
bp_scripts/read_gff [new file with mode: 0755] blob
bp_scripts/read_mysql [new file with mode: 0755] blob
bp_scripts/read_phastcons [new file with mode: 0755] blob
bp_scripts/read_psl [new file with mode: 0755] blob
bp_scripts/read_soft [new file with mode: 0755] blob
bp_scripts/read_solexa [new file with mode: 0755] blob
bp_scripts/read_solid [new file with mode: 0755] blob
bp_scripts/read_stockholm [new file with mode: 0755] blob
bp_scripts/read_tab [new file with mode: 0755] blob
bp_scripts/remove_indels [new file with mode: 0755] blob
bp_scripts/remove_keys [new file with mode: 0755] blob
bp_scripts/rename_keys [new file with mode: 0755] blob
bp_scripts/reverse_seq [new file with mode: 0755] blob
bp_scripts/shuffle_seq [new file with mode: 0755] blob
bp_scripts/sort_records [new file with mode: 0755] blob
bp_scripts/split_bed [new file with mode: 0755] blob
bp_scripts/split_seq [new file with mode: 0755] blob
bp_scripts/sum_vals [new file with mode: 0755] blob
bp_scripts/tile_seq [new file with mode: 0755] blob
bp_scripts/translate_seq [new file with mode: 0755] blob
bp_scripts/transliterate_seq [new file with mode: 0755] blob
bp_scripts/transliterate_vals [new file with mode: 0755] blob
bp_scripts/uniq_vals [new file with mode: 0755] blob
bp_scripts/upload_to_ucsc [new file with mode: 0755] blob
bp_scripts/uppercase_seq [new file with mode: 0755] blob
bp_scripts/vmatch_seq [new file with mode: 0755] blob
bp_scripts/write_2bit [new file with mode: 0755] blob
bp_scripts/write_align [new file with mode: 0755] blob
bp_scripts/write_bed [new file with mode: 0755] blob
bp_scripts/write_blast [new file with mode: 0755] blob
bp_scripts/write_fasta [new file with mode: 0755] blob
bp_scripts/write_psl [new file with mode: 0755] blob
bp_scripts/write_solid [new file with mode: 0755] blob
bp_scripts/write_tab [new file with mode: 0755] blob
bp_usage/add_ident [new file with mode: 0644] blob
bp_usage/align_seq [new file with mode: 0644] blob
bp_usage/analyze_bed [new file with mode: 0644] blob
bp_usage/analyze_seq [new file with mode: 0644] blob
bp_usage/analyze_tags [new file with mode: 0644] blob
bp_usage/analyze_vals [new file with mode: 0644] blob
bp_usage/blast_seq [new file with mode: 0644] blob
bp_usage/blat_seq [new file with mode: 0644] blob
bp_usage/calc_bit_scores [new file with mode: 0644] blob
bp_usage/complement_seq [new file with mode: 0644] blob
bp_usage/complexity_seq [new file with mode: 0644] blob
bp_usage/compute [new file with mode: 0644] blob
bp_usage/count_records [new file with mode: 0644] blob
bp_usage/count_seq [new file with mode: 0644] blob
bp_usage/count_vals [new file with mode: 0644] blob
bp_usage/create_blast_db [new file with mode: 0644] blob
bp_usage/create_vmatch_index [new file with mode: 0644] blob
bp_usage/create_weight_matrix [new file with mode: 0644] blob
bp_usage/extract_seq [new file with mode: 0644] blob
bp_usage/flip_tab [new file with mode: 0644] blob
bp_usage/fold_seq [new file with mode: 0644] blob
bp_usage/get_genome_align [new file with mode: 0644] blob
bp_usage/get_genome_phastcons [new file with mode: 0644] blob
bp_usage/get_genome_seq [new file with mode: 0644] blob
bp_usage/grab [new file with mode: 0644] blob
bp_usage/head_records [new file with mode: 0644] blob
bp_usage/invert_align [new file with mode: 0644] blob
bp_usage/length_seq [new file with mode: 0644] blob
bp_usage/length_vals [new file with mode: 0644] blob
bp_usage/list_biotools [new file with mode: 0644] blob
bp_usage/match_seq [new file with mode: 0644] blob
bp_usage/max_vals [new file with mode: 0644] blob
bp_usage/mean_vals [new file with mode: 0644] blob
bp_usage/median_vals [new file with mode: 0644] blob
bp_usage/merge_vals [new file with mode: 0644] blob
bp_usage/min_vals [new file with mode: 0644] blob
bp_usage/oligo_freq [new file with mode: 0644] blob
bp_usage/patscan_seq [new file with mode: 0644] blob
bp_usage/plot_chrdist [new file with mode: 0644] blob
bp_usage/plot_histogram [new file with mode: 0644] blob
bp_usage/plot_karyogram [new file with mode: 0644] blob
bp_usage/plot_lendist [new file with mode: 0644] blob
bp_usage/plot_matches [new file with mode: 0644] blob
bp_usage/plot_phastcons_profiles [new file with mode: 0644] blob
bp_usage/plot_seqlogo [new file with mode: 0644] blob
bp_usage/print_usage [new file with mode: 0644] blob
bp_usage/random_records [new file with mode: 0644] blob
bp_usage/read_2bit [new file with mode: 0644] blob
bp_usage/read_align [new file with mode: 0644] blob
bp_usage/read_bed [new file with mode: 0644] blob
bp_usage/read_blast_tab [new file with mode: 0644] blob
bp_usage/read_embl [new file with mode: 0644] blob
bp_usage/read_fasta [new file with mode: 0644] blob
bp_usage/read_gff [new file with mode: 0644] blob
bp_usage/read_mysql [new file with mode: 0644] blob
bp_usage/read_phastcons [new file with mode: 0644] blob
bp_usage/read_psl [new file with mode: 0644] blob
bp_usage/read_soft [new file with mode: 0644] blob
bp_usage/read_solexa [new file with mode: 0644] blob
bp_usage/read_solid [new file with mode: 0644] blob
bp_usage/read_stockholm [new file with mode: 0644] blob
bp_usage/read_tab [new file with mode: 0644] blob
bp_usage/remove_indels [new file with mode: 0644] blob
bp_usage/remove_keys [new file with mode: 0644] blob
bp_usage/rename_keys [new file with mode: 0644] blob
bp_usage/reverse_seq [new file with mode: 0644] blob
bp_usage/shuffle_seq [new file with mode: 0644] blob
bp_usage/sort_records [new file with mode: 0644] blob
bp_usage/split_bed [new file with mode: 0644] blob
bp_usage/split_seq [new file with mode: 0644] blob
bp_usage/sum_vals [new file with mode: 0644] blob
bp_usage/tile_seq [new file with mode: 0644] blob
bp_usage/translate_seq [new file with mode: 0644] blob
bp_usage/transliterate_seq [new file with mode: 0644] blob
bp_usage/transliterate_vals [new file with mode: 0644] blob
bp_usage/uniq_vals [new file with mode: 0644] blob
bp_usage/upload_to_ucsc [new file with mode: 0644] blob
bp_usage/uppercase_seq [new file with mode: 0644] blob
bp_usage/vmatch_seq [new file with mode: 0644] blob
bp_usage/write_2bit [new file with mode: 0644] blob
bp_usage/write_align [new file with mode: 0644] blob
bp_usage/write_bed [new file with mode: 0644] blob
bp_usage/write_blast [new file with mode: 0644] blob
bp_usage/write_fasta [new file with mode: 0644] blob
bp_usage/write_psl [new file with mode: 0644] blob
bp_usage/write_solid [new file with mode: 0644] blob
bp_usage/write_tab [new file with mode: 0644] blob
code_c/Maasha/src/Makefile [new file with mode: 0644] blob
code_c/Maasha/src/fasta_count [new file with mode: 0755] blob
code_c/Maasha/src/fasta_count.c [new file with mode: 0644] blob
code_c/Maasha/src/gmon.out [new file with mode: 0644] blob
code_c/Maasha/src/inc/common.h [new file with mode: 0644] blob
code_c/Maasha/src/inc/fasta.h [new file with mode: 0644] blob
code_c/Maasha/src/inc/filesys.h [new file with mode: 0644] blob
code_c/Maasha/src/inc/hash.h [new file with mode: 0644] blob
code_c/Maasha/src/inc/list.h [new file with mode: 0644] blob
code_c/Maasha/src/inc/seq.h [new file with mode: 0644] blob
code_c/Maasha/src/inc/ucsc.h [new file with mode: 0644] blob
code_c/Maasha/src/lib/Makefile [new file with mode: 0644] blob
code_c/Maasha/src/lib/biotools.c [new file with mode: 0644] blob
code_c/Maasha/src/lib/common.c [new file with mode: 0644] blob
code_c/Maasha/src/lib/fasta.c [new file with mode: 0644] blob
code_c/Maasha/src/lib/filesys.c [new file with mode: 0644] blob
code_c/Maasha/src/lib/hash.c [new file with mode: 0644] blob
code_c/Maasha/src/lib/list.c [new file with mode: 0644] blob
code_c/Maasha/src/lib/seq.c [new file with mode: 0644] blob
code_c/Maasha/src/lib/ucsc.c [new file with mode: 0644] blob
code_c/Maasha/src/repeat-O-matic [new file with mode: 0755] blob
code_c/Maasha/src/repeat-O-matic.c [new file with mode: 0644] blob
code_c/Maasha/src/test.c [new file with mode: 0644] blob
code_c/Maasha/src/test2 [new file with mode: 0755] blob
code_c/Maasha/src/test2.c [new file with mode: 0644] blob
code_c/Maasha/src/test_bed [new file with mode: 0755] blob
code_c/Maasha/src/test_bed.c [new file with mode: 0644] blob
code_c/Maasha/src/test_binary_search [new file with mode: 0755] blob
code_c/Maasha/src/test_binary_search.c [new file with mode: 0644] blob
code_c/Maasha/src/test_biotools [new file with mode: 0755] blob
code_c/Maasha/src/test_biotools.c [new file with mode: 0644] blob
code_c/Maasha/src/test_fasta [new file with mode: 0755] blob
code_c/Maasha/src/test_fasta.c [new file with mode: 0644] blob
code_c/Maasha/src/test_file_buffer [new file with mode: 0755] blob
code_c/Maasha/src/test_file_buffer.c [new file with mode: 0644] blob
code_c/Maasha/src/test_hash [new file with mode: 0755] blob
code_c/Maasha/src/test_hash.c [new file with mode: 0644] blob
code_c/Maasha/src/test_list [new file with mode: 0755] blob
code_c/Maasha/src/test_list.c [new file with mode: 0644] blob
code_c/Maasha/src/test_oligo2bin [new file with mode: 0755] blob
code_c/Maasha/src/test_oligo2bin.c [new file with mode: 0755] blob
code_c/Maasha/src/test_revcomp [new file with mode: 0755] blob
code_c/Maasha/src/test_revcomp.c [new file with mode: 0644] blob
code_c/Maasha/src/test_split [new file with mode: 0755] blob
code_c/Maasha/src/test_split.c [new file with mode: 0644] blob
code_perl/Maasha/Align.pm [new file with mode: 0644] blob
code_perl/Maasha/AlignTwoSeq.pm [new file with mode: 0644] blob
code_perl/Maasha/Berkeley_DB.pm [new file with mode: 0644] blob
code_perl/Maasha/Biotools.pm [new file with mode: 0644] blob
code_perl/Maasha/Blast.pm [new file with mode: 0644] blob
code_perl/Maasha/Calc.pm [new file with mode: 0644] blob
code_perl/Maasha/Common.pm [new file with mode: 0644] blob
code_perl/Maasha/Config.pm [new file with mode: 0644] blob
code_perl/Maasha/DumpFunc.pm [new file with mode: 0644] blob
code_perl/Maasha/EMBL.pm [new file with mode: 0644] blob
code_perl/Maasha/Fasta.pm [new file with mode: 0644] blob
code_perl/Maasha/GFF.pm [new file with mode: 0644] blob
code_perl/Maasha/Match.pm [new file with mode: 0644] blob
code_perl/Maasha/Matrix.pm [new file with mode: 0644] blob
code_perl/Maasha/NCBI.pm [new file with mode: 0644] blob
code_perl/Maasha/Patscan.pm [new file with mode: 0644] blob
code_perl/Maasha/Plot.pm [new file with mode: 0644] blob
code_perl/Maasha/README [new file with mode: 0644] blob
code_perl/Maasha/SQL.pm [new file with mode: 0644] blob
code_perl/Maasha/Seq.pm [new file with mode: 0644] blob
code_perl/Maasha/Solid.pm [new file with mode: 0644] blob
code_perl/Maasha/Stockholm.pm [new file with mode: 0644] blob
code_perl/Maasha/Test.pm [new file with mode: 0644] blob
code_perl/Maasha/TwoBit.pm [new file with mode: 0644] blob
code_perl/Maasha/UCSC.pm [new file with mode: 0644] blob
code_perl/README [new file with mode: 0644] blob
Mirror (and my branches) of biopieces http://www.biopieces.org/