Add TODO note about reference lengths

diff --git a/padding.c b/padding.c
index b33032639151453a750e2e9cfe69f2c7282d8349..8d0df07a838b849cfb2ad8d09672f856dfdb81b9 100644 (file)
--- a/padding.c
+++ b/padding.c
@@ -61,6 +61,7 @@ int bam_pad2unpad(bamFile in, bamFile out)
        int n2 = 0, m2 = 0, *posmap = 0;
 
        h = bam_header_read(in);
+       /* TODO - The reference sequence lengths in the BAM + SAM headers should be updated */
        bam_header_write(out, h);
        b = bam_init1();
        r.l = r.m = q.l = q.m = 0; r.s = q.s = 0;