From: peterjc <p.j.a.cock@googlemail.com>
Date: Fri, 23 Mar 2012 13:04:05 +0000 (+0000)
Subject: Add TODO note about reference lengths
X-Git-Url: https://git.donarmstrong.com/?p=samtools.git;a=commitdiff_plain;h=181c7c1165d171e0de9858d76aff23617a83044f

Add TODO note about reference lengths
---

diff --git a/padding.c b/padding.c
index b330326..8d0df07 100644
--- a/padding.c
+++ b/padding.c
@@ -61,6 +61,7 @@ int bam_pad2unpad(bamFile in, bamFile out)
 	int n2 = 0, m2 = 0, *posmap = 0;
 
 	h = bam_header_read(in);
+	/* TODO - The reference sequence lengths in the BAM + SAM headers should be updated */
 	bam_header_write(out, h);
 	b = bam_init1();
 	r.l = r.m = q.l = q.m = 0; r.s = q.s = 0;