From 181c7c1165d171e0de9858d76aff23617a83044f Mon Sep 17 00:00:00 2001 From: peterjc Date: Fri, 23 Mar 2012 13:04:05 +0000 Subject: [PATCH] Add TODO note about reference lengths --- padding.c | 1 + 1 file changed, 1 insertion(+) diff --git a/padding.c b/padding.c index b330326..8d0df07 100644 --- a/padding.c +++ b/padding.c @@ -61,6 +61,7 @@ int bam_pad2unpad(bamFile in, bamFile out) int n2 = 0, m2 = 0, *posmap = 0; h = bam_header_read(in); + /* TODO - The reference sequence lengths in the BAM + SAM headers should be updated */ bam_header_write(out, h); b = bam_init1(); r.l = r.m = q.l = q.m = 0; r.s = q.s = 0; -- 2.39.2