From: Bo Li <bli@cs.wisc.edu>
Date: Mon, 25 Apr 2011 18:11:43 +0000 (-0500)
Subject: back to single thread Gibbs
X-Git-Url: https://git.donarmstrong.com/?p=rsem.git;a=commitdiff_plain;h=a49cbd60d6e84346edbfb27d46f0a3630d404665

back to single thread Gibbs
---

diff --git a/calcCI.cpp b/calcCI.cpp
index f3964d1..c9ccce5 100644
--- a/calcCI.cpp
+++ b/calcCI.cpp
@@ -382,14 +382,12 @@ int main(int argc, char* argv[]) {
 
 	delete[] tau_denoms;
 
-	/*
 	sprintf(command, "rm -f %s", tmpF);
 	int status = system(command);
 	if (status != 0) {
 		fprintf(stderr, "Cannot delete %s!\n", tmpF);
 		exit(-1);
 	}
-	 */
 
 	return 0;
 }
diff --git a/rsem-calculate-expression b/rsem-calculate-expression
index 68aa258..1535147 100755
--- a/rsem-calculate-expression
+++ b/rsem-calculate-expression
@@ -286,7 +286,7 @@ if ($genBamF) {
 
 if ($calcCI) {
     $command = $dir."rsem-run-gibbs $refName $sampleName $sampleToken $BURNIN $NSAMPLES $SAMPLEGAP";
-    $command .= " -p $nThreads";
+#    $command .= " -p $nThreads";
     if ($quiet) { $command .= " -q"; }
     print "$command\n";
     $status = system($command);