| 2009-03-27 |
ryabin | added the Calculators Thomas made in the fall. Added... |
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| 2009-03-26 |
westcott | heatmap |
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| 2009-03-25 |
westcott | started heatmap command |
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| 2009-03-24 |
westcott | added sharedbraycurtis, sharedmorisirahorn, sharedkulcz... |
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| 2009-03-23 |
westcott | added sharedochiai and sharedanderberg calculators |
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| 2009-03-23 |
westcott | fixed libshuff signif. values |
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| 2009-03-23 |
westcott | put back no command and worked on libshuff |
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| 2009-03-20 |
westcott | removed no command because it is never called now that... |
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| 2009-03-20 |
westcott | documentation |
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| 2009-03-19 |
westcott | fixed memory leak globaldata container structures,... |
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| 2009-03-19 |
westcott | fixed memory leak of groupmap in reads |
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| 2009-03-19 |
westcott | updated errorchecking so it checks if the parameter... |
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| 2009-03-19 |
westcott | libshuff and updated help to include libshuff and modif... |
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| 2009-03-18 |
westcott | working on libshuff |
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| 2009-03-16 |
westcott | added nseqs and sharednseqs calculators, removed excess... |
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| 2009-03-10 |
westcott | working on libshuff |
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| 2009-03-09 |
pschloss | changed the ending of the unique fasta sequence file... |
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| 2009-03-09 |
westcott | added abs() to weighted and unweighted to account for... |
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| 2009-03-09 |
westcott | fixed bug in read.tree |
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| 2009-03-09 |
westcott | fixed bug in summary.shared for groups |
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| 2009-03-09 |
westcott | fixed bug with line and label parameters and added... |
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| 2009-03-09 |
westcott | deleted read.shared command and added its functionality... |
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| 2009-03-09 |
westcott | added ability for user to select which groups to analyz... |
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| 2009-03-09 |
westcott | fixed outputs in unifrac to look the same |
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| 2009-03-09 |
westcott | fixed memory issue with cluster command |
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| 2009-03-09 |
westcott | fixed valid parameters to include shared parameter... |
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| 2009-03-07 |
pschloss | mucked around some with the output in the unifrac.weigh... |
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| 2009-03-06 |
westcott | got rid of rd_parsimony ext. |
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| 2009-03-06 |
westcott | fixed bug wit unifrac files |
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| 2009-03-06 |
westcott | added full matrix files |
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| 2009-03-06 |
westcott | fixed bug in random option of parsimony() |
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| 2009-03-06 |
pschloss | fixed parsimony bug |
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| 2009-03-06 |
westcott | changed format of output in unifrac and parsimony files |
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| 2009-03-06 |
westcott | fixed bug in read tree |
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| 2009-03-06 |
westcott | fixed bug in read tree |
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| 2009-03-05 |
westcott | working on readtree |
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| 2009-03-04 |
westcott | unifrac.weighted |
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| 2009-03-03 |
westcott | parsimony output changed |
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| 2009-03-03 |
westcott | unifrac.unweighted command changes |
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| 2009-03-02 |
westcott | worked on unifrac.unweighted() |
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| 2009-03-02 |
westcott | fixed bug in unweighted |
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| 2009-02-27 |
westcott | fixed parsimony with groups and worked on unifrac.unwei... |
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| 2009-02-26 |
westcott | parsimony with groups |
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| 2009-02-26 |
westcott | parsimony with groups |
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| 2009-02-26 |
pschloss | fix weighted unifrac bug in findIndex and randomize... |
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| 2009-02-26 |
westcott | weightedcommand |
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| 2009-02-24 |
westcott | changed unifrac.weighted() |
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| 2009-02-24 |
westcott | changed unifrac.weighted() |
commit | commitdiff | tree | snapshot |
| 2009-02-24 |
westcott | changed unifrac.weighted() |
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| 2009-02-24 |
westcott | test |
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| 2009-02-24 |
pschloss | print tree debugger |
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| 2009-02-24 |
westcott | parsimony fix |
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| 2009-02-23 |
westcott | fixed parsimony for groups |
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| 2009-02-23 |
westcott | fixed parsimony for groups |
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| 2009-02-23 |
westcott | fixed unweighted calculator |
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| 2009-02-20 |
westcott | fixed unweighted calculator |
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| 2009-02-19 |
westcott | added mothur.h and fixed includes in many files |
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| 2009-02-19 |
westcott | fixed linking error in collect, collectshared, and... |
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| 2009-02-18 |
westcott | Johns fix |
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| 2009-02-18 |
ryabin | Added get.line command. |
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| 2009-02-18 |
ryabin | Added get.line command. |
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| 2009-02-18 |
westcott | parsimony command now uses groups, fixed bug with unwei... |
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| 2009-02-18 |
westcott | parsimony command now uses groups, fixed bug with unwei... |
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| 2009-02-18 |
westcott | changed unweighted and weighted score cumulatives to... |
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| 2009-02-18 |
pschloss | fixed bug in read.tree |
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| 2009-02-18 |
westcott | fixed bug in fastmap readFastaFile so that if there... |
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| 2009-02-18 |
westcott | minor bugs fixes and added line and label options to... |
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| 2009-02-13 |
westcott | minor error checking fixes |
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| 2009-02-13 |
westcott | added read.shared, broke up globaldata a bit |
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| 2009-02-12 |
westcott | fixed bug with displaying info for collect.shared(... |
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| 2009-02-11 |
westcott | added errorchecking and help info on new unifrac and... |
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| 2009-02-11 |
westcott | adding treeclimber and unifrac pieces |
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| 2009-01-30 |
pschloss | When Pat tried to compile mothur in Ubuntu linux, there... |
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| 2009-01-29 |
westcott | changed all files to be relative to project instead... |
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| 2009-01-29 |
westcott | rarefaction.shared() fixed bug |
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| 2009-01-28 |
westcott | fixed line and label bug. |
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| 2009-01-28 |
westcott | updated help |
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| 2009-01-28 |
westcott | rarefaction default bug |
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| 2009-01-28 |
westcott | fixed parameter issues |
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| 2009-01-28 |
westcott | collect.single bug in readphil. |
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| 2009-01-28 |
pschloss | I've changed the listfile, sabundfile, etc. option... |
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| 2009-01-26 |
westcott | fixed summary.shared bug and set jumble default to 1. |
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| 2009-01-23 |
westcott | fixed bug in sharedcommand and parselistcommand and... |
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| 2009-01-22 |
westcott | finishing the container classes, combining read.otu... |
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| 2009-01-21 |
westcott | deconvolute command |
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| 2009-01-20 |
westcott | changed read.shared to read.list and incorporated the... |
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| 2009-01-17 |
pschloss | Updated the project setting parameters |
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| 2009-01-16 |
westcott | Initial revision |
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| 2009-01-15 |
pschloss | Initial revision |
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projects / mothur.git / shortlog