]> git.donarmstrong.com Git - mothur.git/shortlog
mothur.git
2012-11-09 Kathryn Iversonfixed rf memory issue in constructure
2012-11-02 Sarah Westcottfix to summary.tax for 1.28.0
2012-10-30 Sarah WestcottMerge remote-tracking branch 'origin/master'
2012-10-30 Sarah Westcottclassify.seqs allows sequences to be in taxonomy file...
2012-10-26 Kathryn Iversonrestructuring random forest implementation
2012-10-26 Kathryn Iversonchanged random forest's inheritance
2012-10-26 Kathryn Iversonadded new class forest
2012-10-22 Sarah WestcottMerge remote-tracking branch 'origin/master'
2012-10-22 Sarah Westcottadded sets to amova and homova commands. added oligos...
2012-10-22 Pat SchlossMerge remote-tracking branch 'mothur/master'
2012-10-22 Pat SchlossPDS: update citation fields
2012-10-09 Sarah Westcottchanged dups parameter to dereplicate in chimera.uchime.
2012-10-09 Sarah Westcottadded dups parameter to chimera.uchime. working on...
2012-10-03 Sarah Westcottadded zap method to classify.seqs and changed bayesian...
2012-10-02 Sarah Westcottadded classify.shared command and random forest files...
2012-09-25 Sarah Westcottadded count file to get.oturep, pre.cluster, screen...
2012-09-14 Sarah Westcottadded count file to trim.seqs, get.groups, get.lineage...
2012-09-12 Sarah Westcottoptimizing classify.seqs calculating of template probab...
2012-09-11 Sarah Westcottadded count file to get.groups and remove.groups. added...
2012-09-07 Sarah Westcottmajor change to the tree class to use the count table...
2012-08-24 Sarah Westcottadded sff.multiple command. fixed issue with windows...
2012-08-21 Sarah Westcottadded oligos, pdiffs, bdiffs, ldiffs, sdiffs, tiffs...
2012-08-14 Sarah Westcottadded code to format fast files for uchime. started...
2012-08-13 Sarah Westcottadded count file to chimera.uchime. found issue with...
2012-08-08 Sarah Westcottadded count parameter to chimera.slayer command
2012-08-08 Sarah Westcottadded SequenceCountParser class to parse the count...
2012-08-06 Sarah Westcottchanges while testing 1.27
2012-08-01 Sarah Westcottparalellized chop.seqs
2012-07-31 Sarah Westcottadded count file to cluster.classic and cluster.split...
2012-07-30 Pat SchlossMerge remote-tracking branch 'mothur/master'
2012-07-30 Sarah Westcottfixed subsample name file name issue. added count...
2012-07-27 Sarah Westcottadded sparseDistanceMatrix class. Modified cluster...
2012-07-11 Sarah Westcottworking on adding count file to mgcluster
2012-07-11 Sarah Westcottworking on mgcluster count file change
2012-07-11 Sarah WestcottMerge remote-tracking branch 'origin/master'
2012-07-11 Sarah Westcottadded debug statements to trim.seqs
2012-07-11 Kathryn Iversonmerged mgcluster. kw files added, but not working in...
2012-07-10 Sarah Westcottchanges while testing 1.26
2012-07-03 Kathryn Iversonfixed pointers in mgcluster
2012-07-03 Kathryn Iversonfixed kw parameter types
2012-07-03 Kathryn Iversonupdated mgcluster to take count file
2012-07-03 Kathryn Iversonupdated parameters for kw
2012-07-03 Kathryn IversonMerge branch 'master' of https://github.com/mothur...
2012-07-03 Sarah Westcottchanges while testing 1.26
2012-07-02 Kathryn Iversonupdated getgroupnames
2012-07-02 kdiversonfixed io
2012-07-02 kdiversoncleaned up code2
2012-06-29 kdiversoncleaned up code
2012-06-29 kiversonremoved comments
2012-06-28 Kathryn Iversonupdated kruskalwallis struct
2012-06-28 Kathryn Iversonupdated kruskalwallis struct
2012-06-28 Sarah Westcottadded countable class to read and store count file...
2012-06-28 Kathryn Iversonupdated kruskalwallis command
2012-06-26 Kathryn Iversonadded kruskalwallis command
2012-06-26 Sarah WestcottMerge remote-tracking branch 'origin/master'
2012-06-26 Sarah Westcottmade make.table alias to count.seqs command. added...
2012-06-26 Kathryn Iversonremoved print statements from testing
2012-06-22 Kathryn Iversonadded large parameter to mgcluster along with new rabun...
2012-06-22 kiversonremoved comments
2012-06-21 Kathryn Iversonedited createRabund function
2012-06-20 Kathryn Iversonedited createRabund function
2012-06-20 Kathryn Iversonadded createRabund function to mgcluster
2012-06-20 Kathryn Iversonadded ifelse for rabund
2012-06-20 Kathryn Iversontesting new devel branch
2012-06-19 Sarah Westcottadded phylip as output file type for commands that...
2012-06-19 Sarah Westcottadded load.logfile command. changed summary.single...
2012-06-12 Sarah Westcottchanged reading of name file to use buffered reads...
2012-06-11 Sarah Westcottfixed bug with dist.shared subsampling. added mode...
2012-06-07 Pat SchlossMerge remote-tracking branch 'mothur/master'
2012-06-07 Pat Schlossdunno
2012-06-05 Sarah Westcottadded forward and reverse barcodes to trim.seqs to...
2012-06-04 Sarah Westcottfixed classify.seqs output file name - had issue if...
2012-06-04 Sarah Westcottadded check to make sure shhh.flows child processes...
2012-05-31 Pat SchlossMerge remote-tracking branch 'mothur/master'
2012-05-31 Pat Schlosschange to .gitignore
2012-05-29 Sarah Westcottadded code to check path for uchime and catchall execut...
2012-05-24 Sarah Westcottforced rarefaction.single to output ending line for...
2012-05-24 Sarah Westcottfixed bug in sffinfo when ~ was used in the sff filenam...
2012-05-23 Sarah Westcottadded metadata parameter to otu.association
2012-05-23 Sarah Westcottadded design and sets parameters to the rarefaction...
2012-05-22 Sarah Westcottadded debug output classify.seqs. worked on make.contig...
2012-05-21 Sarah Westcottadded get.otulabels and remove.otulabels commands per...
2012-05-18 Sarah Westcottadded threshold parameter to make.contigs command.
2012-05-18 Sarah WestcottMerge remote-tracking branch 'origin/master'
2012-05-18 Sarah Westcottadded check to cluster.classic to make sure file type...
2012-05-16 Kathryn Iversonadded check for numOTUS, will skip if < 2.
2012-05-16 Kathryn IversonMerge branch 'master' of https://github.com/mothur...
2012-05-16 Kathryn Iversonupdated output to include standard deviation
2012-05-16 Kathryn Iversonreplaced p-value with zscore for lookup in ztable.
2012-05-16 Sarah Westcottadded classic parameter to cluster.split. working...
2012-05-15 Kathryn Iversonadded functions to calculate standard deviation and...
2012-05-15 Sarah Westcottadded list.labels command. started work on make.contigs...
2012-05-14 Sarah Westcottlast checkin for 1.25.1
2012-05-14 Sarah Westcottfixed bug in make.biom that occurred if some taxonomies...
2012-05-14 Sarah WestcottMerge remote-tracking branch 'origin/master'
2012-05-14 Sarah Westcottadded debug info to engines function to get mother...
2012-05-14 John Westcotttrying to clean up project files path issues
2012-05-14 Pat Schlossfixing pbxproj
2012-05-14 Pat SchlossMerge remote-tracking branch 'mothur/master'
2012-05-14 Pat Schlosssmall mods to sensspec command
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