| 2011-04-18 |
westcott | modified chimera.slayer template=self
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commit | commitdiff | tree |
| 2011-04-15 |
westcott | 1.18.1
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commit | commitdiff | tree |
| 2011-04-11 |
westcott | 1.18.0 - fixed make.shared abort issue
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commit | commitdiff | tree |
| 2011-04-11 |
westcott | 1.18.0
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commit | commitdiff | tree |
| 2011-04-11 |
westcott | 1.18.0
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commit | commitdiff | tree |
| 2011-04-11 |
westcott | fixed sub.sample groups bug
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commit | commitdiff | tree |
| 2011-04-08 |
westcott | fixed sub.sample so that it will eliminate samples...
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commit | commitdiff | tree |
| 2011-04-08 |
westcott | fixing bugs while testing
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commit | commitdiff | tree |
| 2011-04-07 |
westcott | fixed bug with tree reading
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commit | commitdiff | tree |
| 2011-04-06 |
westcott | changes while setting up test files
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commit | commitdiff | tree |
| 2011-04-06 |
westcott | added getCommandInfoCommand for gui
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commit | commitdiff | tree |
| 2011-04-06 |
westcott | added commandParameter class
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commit | commitdiff | tree |
| 2011-04-06 |
westcott | removed read.dist, read.otu, read.tree and globaldata...
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commit | commitdiff | tree |
| 2011-04-04 |
westcott | sped up the remove.seqs and remove.lineage and get...
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commit | commitdiff | tree |
| 2011-03-30 |
westcott | fixed problem with sffinfo that caused a file mismatch...
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commit | commitdiff | tree |
| 2011-03-22 |
westcott | fixed trim.seqs group counts by adding back in the...
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commit | commitdiff | tree |
| 2011-03-22 |
westcott | working on pca
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commit | commitdiff | tree |
| 2011-03-22 |
westcott | working on pca
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commit | commitdiff | tree |
| 2011-03-22 |
westcott | fixed clearcut version bug, added group count output...
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commit | commitdiff | tree |
| 2011-03-22 |
westcott | fixed clearcut version bug, added group count output...
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commit | commitdiff | tree |
| 2011-03-21 |
westcott | fixed get.lienage and remove.lineage bug with confidence...
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commit | commitdiff | tree |
| 2011-03-16 |
westcott | fixed catchall "clunky" names
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commit | commitdiff | tree |
| 2011-03-16 |
westcott | fixed the bug that caused mothur to choke on other...
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commit | commitdiff | tree |
| 2011-03-16 |
westcott | added set.current and get.current commands and modified...
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commit | commitdiff | tree |
| 2011-03-15 |
westcott | adding current file class
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commit | commitdiff | tree |
| 2011-03-15 |
westcott | adding current file class
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commit | commitdiff | tree |
| 2011-03-11 |
westcott | sped up align.seqs appending of files
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commit | commitdiff | tree |
| 2011-03-11 |
westcott | added summary outputs for align.check
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commit | commitdiff | tree |
| 2011-03-11 |
westcott | added namefile to align.check and added seqs from namefile...
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commit | commitdiff | tree |
| 2011-03-11 |
westcott | added namefile to summary.seqs
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commit | commitdiff | tree |
| 2011-03-07 |
westcott | trim.seqs fix
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commit | commitdiff | tree |
| 2011-03-04 |
westcott | worked on trim.seqs - added in the groupfiles for allfiles...
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commit | commitdiff | tree |
| 2011-03-04 |
westcott | worked on trim.seqs - added in the groupfiles for allfiles...
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commit | commitdiff | tree |
| 2011-03-04 |
westcott | bug fixes
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commit | commitdiff | tree |
| 2011-02-28 |
westcott | fixed unweighted command
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commit | commitdiff | tree |
| 2011-02-25 |
westcott | changed version and release date
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commit | commitdiff | tree |
| 2011-02-25 |
westcott | added root parameter to the unifrac commands so you...
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commit | commitdiff | tree |
| 2011-02-23 |
westcott | fixed bug in unifrac commands with nexus translation...
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commit | commitdiff | tree |
| 2011-02-23 |
westcott | fixed bug in unifrac commands with nexus translation...
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commit | commitdiff | tree |
| 2011-02-23 |
westcott | fixed bug in unifrac commands with unrooted trees
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commit | commitdiff | tree |
| 2011-02-23 |
westcott | fixed bug in unifrac commands with unrooted trees
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commit | commitdiff | tree |
| 2011-02-18 |
westcott | fixed unifrac bug with multiple processors if numComps...
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commit | commitdiff | tree |
| 2011-02-15 |
westcott | finished anosim command
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commit | commitdiff | tree |
| 2011-02-15 |
westcott | working on anosim command
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commit | commitdiff | tree |
| 2011-02-15 |
westcott | finished the chimera.slayer split function
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commit | commitdiff | tree |
| 2011-02-15 |
westcott | fixed mpi version compile issue with chimera.slayer
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commit | commitdiff | tree |
| 2011-02-14 |
westcott | added make.fastq command
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commit | commitdiff | tree |
| 2011-02-14 |
westcott | fixed catchall PATH variable bug added trimera to chimera...
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commit | commitdiff | tree |
| 2011-02-09 |
westcott | added mantel command
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commit | commitdiff | tree |
| 2011-02-09 |
westcott | added mantel command
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commit | commitdiff | tree |
| 2011-02-08 |
westcott | added [ERROR] flag if command aborts
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commit | commitdiff | tree |
| 2011-02-08 |
westcott | fixed homova command
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commit | commitdiff | tree |
| 2011-02-08 |
westcott | added homova command
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commit | commitdiff | tree |
| 2011-02-08 |
westcott | added homova command
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commit | commitdiff | tree |
| 2011-02-08 |
westcott | added amova command
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commit | commitdiff | tree |
| 2011-02-08 |
westcott | added amova command
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commit | commitdiff | tree |
| 2011-02-08 |
westcott | added amova command
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commit | commitdiff | tree |
| 2011-02-07 |
westcott | adding license
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commit | commitdiff | tree |
| 2011-02-04 |
westcott | fixed kendall method in corr.axes
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commit | commitdiff | tree |
| 2011-02-04 |
westcott | working on kendall
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commit | commitdiff | tree |
| 2011-02-04 |
westcott | fixed catchall hangup if it can't find the exe
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commit | commitdiff | tree |
| 2011-02-03 |
westcott | corr.axes spearman
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commit | commitdiff | tree |
| 2011-02-03 |
westcott | changes for 1.16.0
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commit | commitdiff | tree |
| 2011-01-26 |
westcott | fixed mempearson and structpearson
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commit | commitdiff | tree |
| 2011-01-26 |
westcott | mods in testing 1.16.0
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commit | commitdiff | tree |
| 2011-01-25 |
westcott | mods for 1.16
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commit | commitdiff | tree |
| 2011-01-24 |
westcott | added merge.groups command
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commit | commitdiff | tree |
| 2011-01-24 |
westcott | added zscore method to normalize.shared
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commit | commitdiff | tree |
| 2011-01-24 |
westcott | remove.rare command
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commit | commitdiff | tree |
| 2011-01-21 |
westcott | modified shhhercommand to make buildable with windows
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commit | commitdiff | tree |
| 2011-01-21 |
westcott | added calcs to tree.shared. working on remove.rare...
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commit | commitdiff | tree |
| 2011-01-21 |
westcott | added diffs and percent parameters to cluster.fragments...
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commit | commitdiff | tree |
| 2011-01-21 |
westcott | nmds command done
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commit | commitdiff | tree |
| 2011-01-21 |
westcott | working on nmds
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commit | commitdiff | tree |
| 2011-01-21 |
westcott | working on nmds
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commit | commitdiff | tree |
| 2011-01-19 |
westcott | working on nmds command
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commit | commitdiff | tree |
| 2011-01-19 |
westcott | working on nmds command
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commit | commitdiff | tree |
| 2011-01-14 |
westcott | fixed trim.seqs bug with qtrim parameter and added...
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commit | commitdiff | tree |
| 2011-01-10 |
westcott | pca command
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commit | commitdiff | tree |
| 2011-01-10 |
westcott | pca command
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commit | commitdiff | tree |
| 2011-01-07 |
westcott | finished chimera.slayer adding trim parameter, added...
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commit | commitdiff | tree |
| 2011-01-07 |
westcott | working on chimera change to add trim feature, fixed...
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commit | commitdiff | tree |
| 2011-01-05 |
westcott | added pearson coefficient metric to pcoa
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commit | commitdiff | tree |
| 2011-01-05 |
westcott | changed filename of pcacommand to pcoacommand
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commit | commitdiff | tree |
| 2011-01-05 |
westcott | removed various build warnings
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commit | commitdiff | tree |
| 2011-01-05 |
westcott | added metadata file as input to corr.axes
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commit | commitdiff | tree |
| 2011-01-04 |
westcott | Changed back to xcode build.
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commit | commitdiff | tree |
| 2011-01-04 |
westcott | Changed back to xcode build.
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commit | commitdiff | tree |
| 2011-01-04 |
westcott | Changed back to xcode build.
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commit | commitdiff | tree |
| 2011-01-04 |
westcott | removed parse.sff command and made its functionality...
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commit | commitdiff | tree |
| 2011-01-03 |
westcott | added template=self capability to chimers.slayer, worked...
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commit | commitdiff | tree |
| 2010-12-23 |
westcott | fixed memory leak in maligner minCoverageFilter function...
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commit | commitdiff | tree |
| 2010-12-23 |
westcott | fixed memory leak in decalc findClosest function used...
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commit | commitdiff | tree |
| 2010-12-22 |
westcott | chimera.slayer fix
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commit | commitdiff | tree |
| 2010-12-22 |
westcott | fixed trim.seqs weird characters thing
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commit | commitdiff | tree |
| 2010-12-22 |
westcott | added output filenames and m->control_pressed stuff...
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commit | commitdiff | tree |
| 2010-12-17 |
westcott | added design parameter to the indicator command
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commit | commitdiff | tree |
| 2010-12-17 |
westcott | added odum, canberra, structchi2, structchord, structeuclid...
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commit | commitdiff | tree |
| 2010-12-17 |
westcott | fixed bug with trim.seqs- when a file is blank for...
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commit | commitdiff | tree |
| 2010-12-14 |
westcott | added confidence scores to get.lineage and remove.lineage
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commit | commitdiff | tree |
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