| 2009-12-23 |
westcott | precluster command finished |
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| 2009-12-21 |
westcott | fixed some bugs and added mgcluster command |
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| 2009-12-09 |
westcott | added sorted parameter to get.oturep, added error check... |
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| 2009-12-08 |
westcott | added list parameter to get.seqs and remove.seqs and... |
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| 2009-11-25 |
pschloss | version for 10.5 |
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| 2009-11-24 |
pschloss | fixed splash page citation |
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| 2009-11-23 |
westcott | added phylotype command which reads a taxonomy file... |
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| 2009-11-17 |
westcott | final fixes for 1.7 |
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| 2009-11-13 |
westcott | finished work on classify.seqs bayesian method and... |
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| 2009-11-05 |
westcott | started work on classify.seqs command. changed the... |
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| 2009-10-29 |
westcott | added hcluster command and fixed some bugs, namely... |
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| 2009-10-12 |
westcott | finished chimeraslayer method and added get.listcount... |
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| 2009-09-28 |
westcott | started adding chimeraslayer method and fixed minor... |
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| 2009-09-23 |
westcott | added get.sharedotu command |
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| 2009-09-18 |
westcott | adding more error checking for list and group files... |
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| 2009-09-15 |
westcott | fixed some issues while testing 1.6 |
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| 2009-09-09 |
westcott | continued work on chimeras and fixed bug in trim.seqs... |
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| 2009-09-01 |
westcott | changed raredisplay to use vectors instead of files |
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| 2009-09-01 |
westcott | added more descriptive error messages to sharedlist |
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| 2009-08-31 |
westcott | checking in chimera files in progress after move to... |
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| 2009-08-12 |
westcott | removing mallard |
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| 2009-08-11 |
westcott | chimera.seqs pintail is working. |
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| 2009-08-10 |
pschloss | mothur-v.1.5.0 |
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| 2009-07-30 |
pschloss | pat's edits prior to v.1.5 |
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| 2009-07-26 |
westcott | fixed bug with aligner in database class, worked on... |
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| 2009-07-22 |
westcott | worked on chimeras |
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| 2009-07-10 |
westcott | added sorted option to get.rabund command |
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| 2009-07-08 |
westcott | added stricter compilation requirements and fixed resul... |
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| 2009-07-08 |
westcott | added system command |
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| 2009-07-08 |
westcott | added remove.seqs command |
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| 2009-07-08 |
westcott | added get.seqs command |
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| 2009-07-08 |
westcott | added list.seqs command |
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| 2009-07-02 |
westcott | made changes to concensus to find a better tree. also... |
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| 2009-06-29 |
westcott | fixed misspelling on consensus |
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| 2009-06-29 |
westcott | modified read.otu and shared command |
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| 2009-06-22 |
westcott | worked on parselist and shared commands, removing memor... |
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| 2009-06-21 |
pschloss | This is v.1.4.0 |
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| 2009-06-16 |
pschloss | a few minor things - pds |
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| 2009-06-15 |
westcott | fixing minor bugs |
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| 2009-06-15 |
westcott | removed validcommands and put its checking in commandfa... |
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| 2009-06-14 |
pschloss | merged pat's trim seqs edits with sarah's major overhau... |
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| 2009-06-12 |
westcott | broke up globaldata and moved error checking and help... |
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| 2009-06-08 |
westcott | added heatmap.sim command and changed heatmap to heatma... |
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| 2009-06-08 |
pschloss | added some features to trim.seqs |
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| 2009-06-06 |
pschloss | added trim.seqs command |
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| 2009-06-06 |
pschloss | added reverse.seqs command |
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| 2009-06-04 |
pschloss | remove some files |
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| 2009-06-04 |
westcott | removed readseqs, readfasta, readnexus, readclustal... |
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| 2009-06-04 |
pschloss | modified filter.seqs to not store all seqs in memory... |
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| 2009-06-04 |
westcott | fixed some bugs |
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| 2009-06-03 |
westcott | added get.rabund and get.sabund command and fixed bug... |
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| 2009-06-03 |
pschloss | addition of summary.seq command [pds] |
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| 2009-05-24 |
pschloss | This contains Pat's bug fixes and updates. It represen... |
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| 2009-05-21 |
westcott | modified bin.seqs and get.oturep commands to include... |
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| 2009-05-21 |
westcott | fixed Thomas' calculators |
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| 2009-05-20 |
westcott | added get.repseqs command, started matrix output command |
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| 2009-05-18 |
westcott | added shen calculator |
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| 2009-05-18 |
westcott | added help for alignment code and thomas' calcs to... |
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| 2009-05-18 |
westcott | added alignment code |
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| 2009-05-12 |
westcott | added distance command and filterseqs |
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| 2009-05-08 |
westcott | altered venn command to make use of sharedchao for... |
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| 2009-05-07 |
westcott | fixed concensus command and modified tree class so... |
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| 2009-05-04 |
westcott | fixed xp user bug with rarefact commands and cluster... |
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| 2009-05-04 |
westcott | added concensus command and updated calcs |
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| 2009-05-04 |
westcott | added concensus command |
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| 2009-04-23 |
pschloss | more calculator edits and added coverage and whittaker |
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| 2009-04-21 |
westcott | broke apart read matrix file |
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| 2009-04-17 |
westcott | added bootstrap.shared command and fixed some bugs... |
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| 2009-04-14 |
pschloss | *** empty log message *** |
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| 2009-04-14 |
westcott | started shared utilities, updates to venn and heatmap... |
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| 2009-04-06 |
westcott | added get.oturep command |
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| 2009-04-06 |
westcott | fixed memory leak in parsimony calculator and added... |
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| 2009-03-31 |
westcott | started venn command |
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| 2009-03-30 |
ryabin | Fixed validParameter() method so line parameter can... |
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| 2009-03-30 |
westcott | added sort to heatmap to put shared otus at the top... |
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| 2009-03-27 |
westcott | fixed reference issue |
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| 2009-03-27 |
westcott | added heatmap command |
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| 2009-03-27 |
westcott | added heatmap command |
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| 2009-03-27 |
ryabin | added the Calculators Thomas made in the fall. Added... |
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| 2009-03-27 |
ryabin | added the Calculators Thomas made in the fall. Added... |
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| 2009-03-25 |
westcott | started heatmap command |
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| 2009-03-24 |
westcott | added sharedbraycurtis, sharedmorisirahorn, sharedkulcz... |
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| 2009-03-23 |
westcott | added sharedochiai and sharedanderberg calculators |
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| 2009-03-23 |
westcott | put back no command and worked on libshuff |
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| 2009-03-20 |
westcott | removed no command because it is never called now that... |
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| 2009-03-16 |
westcott | added nseqs and sharednseqs calculators, removed excess... |
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| 2009-03-10 |
westcott | working on libshuff |
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| 2009-03-09 |
westcott | fixed bug in read.tree |
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| 2009-03-09 |
westcott | deleted read.shared command and added its functionality... |
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| 2009-03-06 |
westcott | fixed bug in random option of parsimony() |
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| 2009-02-26 |
pschloss | fix weighted unifrac bug in findIndex and randomize... |
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| 2009-02-24 |
pschloss | print tree debugger |
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| 2009-02-19 |
westcott | added mothur.h and fixed includes in many files |
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| 2009-02-18 |
westcott | Johns fix |
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| 2009-02-18 |
ryabin | Added get.line command. |
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| 2009-02-18 |
ryabin | Added get.line command. |
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| 2009-02-18 |
pschloss | fixed bug in read.tree |
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| 2009-02-13 |
westcott | added read.shared, broke up globaldata a bit |
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| 2009-02-12 |
westcott | fixed bug with displaying info for collect.shared(... |
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| 2009-02-11 |
westcott | adding treeclimber and unifrac pieces |
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