added pcr.seqs command. fixed bug in rarefacftion.single that caused parsing error...

[mothur.git] / classifyseqscommand.cpp

diff --git a/classifyseqscommand.cpp b/classifyseqscommand.cpp
index 664db6b3fdf7f991b851472405dc1493b0369147..0504e6635802c3f6e3e186e4568675906774b3ff 100644 (file)
--- a/classifyseqscommand.cpp
+++ b/classifyseqscommand.cpp
@@ -457,10 +457,14 @@ ClassifySeqsCommand::ClassifySeqsCommand(string option)  {
                                search = "kmer";
                        }
                        
-                       if (namefileNames.size() == 0){
-                               vector<string> files; files.push_back(fastaFileNames[fastaFileNames.size()-1]); 
-                               parser.getNameFile(files);
-                       }
+            if (!abort) {
+                if (namefileNames.size() == 0){
+                    if (fastaFileNames.size() != 0) {
+                        vector<string> files; files.push_back(fastaFileNames[fastaFileNames.size()-1]); 
+                        parser.getNameFile(files);
+                    }
+                }
+            }
                        
                }