added pcr.seqs command. fixed bug in rarefacftion.single that caused parsing error...

[mothur.git] / screenseqscommand.cpp

diff --git a/screenseqscommand.cpp b/screenseqscommand.cpp
index 09ff9b5fea6a92ba4a45bb721cb33df9337e7ef6..7ac910d4a74b9fc1bffeacb32f5893941f3eb60f 100644 (file)
--- a/screenseqscommand.cpp
+++ b/screenseqscommand.cpp
@@ -1358,7 +1358,7 @@ int ScreenSeqsCommand::createProcesses(string goodFileName, string badAccnos, st
             if (i!=0) {extension += toString(i) + ".temp"; processIDS.push_back(i); }
             
                        // Allocate memory for thread data.
-                       sumScreenData* tempSum = new sumScreenData(startPos, endPos, maxAmbig, maxHomoP, minLength, maxLength, filename, m, lines[i].start, lines[i].end,goodFileName+extension, badAccnos+extension, &badSeqNames);
+                       sumScreenData* tempSum = new sumScreenData(startPos, endPos, maxAmbig, maxHomoP, minLength, maxLength, filename, m, lines[i].start, lines[i].end,goodFileName+extension, badAccnos+extension);
                        pDataArray.push_back(tempSum);
                        
                        //default security attributes, thread function name, argument to thread function, use default creation flags, returns the thread identifier
@@ -1375,6 +1375,7 @@ int ScreenSeqsCommand::createProcesses(string goodFileName, string badAccnos, st
                //Close all thread handles and free memory allocations.
                for(int i=0; i < pDataArray.size(); i++){
                        num += pDataArray[i]->count;
+            for (set<string>::iterator it = pDataArray[i]->badSeqNames.begin(); it != pDataArray[i]->badSeqNames.end(); it++) {        badSeqNames.insert(*it);       }
                        CloseHandle(hThreadArray[i]);
                        delete pDataArray[i];
                }