added pcr.seqs command. fixed bug in rarefacftion.single that caused parsing error...

[mothur.git] / mothurout.h

diff --git a/mothurout.h b/mothurout.h
index 12de987e231247a4fb195aef20054bd94dacd375..e1c8222ae1938e8b63422cc9ee6567d309b668f5 100644 (file)
--- a/mothurout.h
+++ b/mothurout.h
@@ -138,7 +138,7 @@ class MothurOut {
                int getRandomIndex(int); //highest
 
                int control_pressed;
-               bool executing, runParse, jumble, gui;
+               bool executing, runParse, jumble, gui, mothurCalling;
                
                //current files - if you add a new type you must edit optionParser->getParameters, get.current command and mothurOut->printCurrentFiles/clearCurrentFiles.
                string getPhylipFile()          { return phylipfile;            }
@@ -219,6 +219,7 @@ class MothurOut {
                        gui = false;
                        printedHeaders = false;
                        commandInputsConvertError = false;
+            mothurCalling = false;
                        sharedHeaderMode = "";
                }
                ~MothurOut();