added sparseDistanceMatrix class. Modified cluster commands to use the new sparse...

[mothur.git] / readblast.h

diff --git a/readblast.h b/readblast.h
index fd32380c20c1a7145a8c65d07700b54d2d5bc63b..ef5ff9afa182f5fb7f7226c506481a0252964962 100644 (file)
--- a/readblast.h
+++ b/readblast.h
@@ -10,7 +10,7 @@
  */
 
 #include "mothur.h"
-#include "sparsematrix.hpp"
+#include "sparsedistancematrix.h"
 #include "nameassignment.hpp"
 
 /****************************************************************************************/
@@ -26,7 +26,7 @@ public:
        ~ReadBlast() {}
        
        int read(NameAssignment*);
-       SparseMatrix* getDistMatrix()           {       return matrix;          }
+       SparseDistanceMatrix* getDistMatrix()           {       return matrix;          }
        vector<seqDist> getOverlapMatrix()      {       return overlap;         }
        string getOverlapFile()                         {       return overlapFile;     }
        string getDistFile()                            {       return distFile;        }
@@ -38,7 +38,7 @@ private:
        bool minWanted;  //if true choose min bsr, if false choose max bsr
        bool hclusterWanted;
        
-       SparseMatrix* matrix;
+       SparseDistanceMatrix* matrix;
        vector<seqDist> overlap;
        MothurOut* m;