added sparseDistanceMatrix class. Modified cluster commands to use the new sparse...

[mothur.git] / phylodiversitycommand.cpp

diff --git a/phylodiversitycommand.cpp b/phylodiversitycommand.cpp
index 9d68cb5debbbc65472577c4861391bb8ffbde3bc..ddd2b316d507b8477d84d529ae9fc4d88c69e518 100644 (file)
--- a/phylodiversitycommand.cpp
+++ b/phylodiversitycommand.cpp
@@ -346,7 +346,7 @@ int PhyloDiversityCommand::execute(){
        
                if (m->control_pressed) { for (int i = 0; i < outputNames.size(); i++) {        m->mothurRemove(outputNames[i]);        } return 0; }
 
-        m->mothurOut("It took " + toString(time(NULL) - start) + " secs to run unifrac.unweighted."); m->mothurOutEndLine();
+        m->mothurOut("It took " + toString(time(NULL) - start) + " secs to run phylo.diversity."); m->mothurOutEndLine();
 
         
                m->mothurOutEndLine();
@@ -460,7 +460,7 @@ int PhyloDiversityCommand::driver(Tree* t, map< string, vector<float> >& div, ma
         
                for (int l = 0; l < numIters; l++) {
                                random_shuffle(randomLeaf.begin(), randomLeaf.end());
-            cout << l << endl;
+         
                                //initialize counts
                                map<string, int> counts;
                 vector< map<string, bool> > countedBranch;