Tree* createTree(vector< vector<double> >&);
void printSims(ostream&, vector< vector<double> >&);
int makeSimsShared();
- vector< vector<double> > makeSimsDist();
+ vector< vector<double> > makeSimsDist(SparseDistanceMatrix*);
int writeTree(string, Tree*);
int driver(vector<SharedRAbundVector*>, int, int, vector< vector<seqDist> >&);
- ReadMatrix* readMatrix;
- SparseMatrix* matrix;
NameAssignment* nameMap;
ListVector* list;
TreeMap* tmap;