7 * Created by Sarah Westcott on 3/30/09.
8 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
12 #include "command.hpp"
13 #include "inputdata.h"
15 #include "sharedlistvector.h"
17 #include "validcalculator.h"
23 class VennCommand : public Command {
32 GlobalData* globaldata;
35 SharedListVector* SharedList;
37 vector<Calculator*> vennCalculators;
38 ValidCalculators* validCalculator;
39 vector<SharedRAbundVector*> lookup;
40 set< set<int> > combosOfFour;
44 bool abort, allLines, nseqs, perm;
45 set<string> labels; //holds labels to be used
46 string format, groups, calc, label, outputDir;
47 vector<string> Estimators, Groups;
49 set< set<int> > findCombinations(int);
50 int getCombos(set<int>, set< set<int> >&);