validparameter.cpp

   1 /*
   2  *  validparameter.cpp
   3  *  Dotur
   4  *
   5  *  Created by Sarah Westcott on 1/5/09.
   6  *  Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
   7  *
   8  */
   9
  10 #include "validparameter.h"
  11
  12 /***********************************************************************/
  13
  14 ValidParameters::ValidParameters() {
  15         try {
  16
  17                 parameters["distfile"]                  = "distfile";
  18                 parameters["listfile"]                  = "listfile";
  19                 parameters["rabundfile"]                = "rabundfile";
  20                 parameters["sabundfile"]                = "sabundfile";
  21                 parameters["namefile"]                  = "namefile";
  22                 parameters["groupfile"]                 = "groupfile";
  23                 parameters["orderfile"]                 = "orderfile";
  24                 parameters["fileroot"]                  = "fileroot";
  25                 parameters["cutoff"]                    = "cutoff";
  26                 parameters["method"]                    = "method";
  27                 parameters["format"]                    = "format";
  28                 parameters["precision"]                 = "precision";
  29                 parameters["label"]                             = "label";
  30                 parameters["line"]                              = "line";
  31                 parameters["iters"]                             = "iters";
  32                 parameters["jumble"]                    = "jumble";
  33                 parameters["freq"]                              = "freq";
  34                 parameters["single"]                    = "single";
  35                 parameters["rarefaction"]               = "rarefaction";
  36                 parameters["sharedrarefaction"] = "sharedrarefaction";
  37                 parameters["shared"]                    = "shared";
  38                 parameters["summary"]                   = "summary";
  39                 parameters["sharedsummary"]             = "sharedsummary";
  40
  41         }
  42         catch(exception& e) {
  43                 cout << "Standard Error: " << e.what() << " has occurred in the ValidParameters class Function ValidParameters. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
  44                 exit(1);
  45         }
  46         catch(...) {
  47                 cout << "An unknown error has occurred in the ValidParameters class function ValidParameters. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
  48                 exit(1);
  49         }
  50 }
  51
  52 /***********************************************************************/
  53
  54 ValidParameters::~ValidParameters() {}
  55
  56 /***********************************************************************/
  57 bool ValidParameters::isValidParameter(string parameter) {
  58         try {
  59
  60                 //is the parameter in the map
  61                 if ((parameters.find(parameter)) != (parameters.end())) {
  62                         return true;
  63                 }else{
  64                         cout << parameter << " is not a valid parameter in Mothur." << endl;
  65                         return false;
  66                 }
  67
  68         }
  69         catch(exception& e) {
  70                 cout << "Standard Error: " << e.what() << " has occurred in the ValidParameters class Function isValidParameter. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
  71                 exit(1);
  72         }
  73         catch(...) {
  74                 cout << "An unknown error has occurred in the ValidParameters class function isValidParameter. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
  75                 exit(1);
  76         }
  77 }
  78
  79 /***********************************************************************/