sharedsabundvector.h

   1 #ifndef SHAREDSABUND_H
   2 #define SHAREDSABUND_H
   3
   4
   5 /*
   6  *  sharedSharedSAbundVector.h
   7  *  Dotur
   8  *
   9  *  Created by Sarah Westcott on 12/10/08.
  10  *  Copyright 2008 __MyCompanyName__. All rights reserved.
  11  *
  12  */
  13
  14
  15 #include <Carbon/Carbon.h>
  16 #include "datavector.hpp"
  17 #include "rabundvector.hpp"
  18 #include "ordervector.hpp"
  19 #include "sharedordervector.h"
  20 #include "sharedrabundvector.h"
  21
  22 using namespace std;
  23
  24 class SharedSAbundVector : public DataVector {
  25
  26 public:
  27         SharedSAbundVector();
  28         SharedSAbundVector(int);
  29         SharedSAbundVector(const SharedSAbundVector& rv) : DataVector(rv.label), data(rv.data), maxRank(rv.maxRank), numBins(rv.numBins), numSeqs(rv.numSeqs){};
  30         ~SharedSAbundVector(){};
  31
  32         int getNumBins();
  33         int getNumSeqs();
  34         int getMaxRank();
  35         string getGroup();
  36         void setGroup(string);
  37
  38         void set(int, int, string);
  39         individual get(int);
  40         int getAbundance(int);
  41         void push_back(int, int, string);
  42         void pop_back();
  43         void resize(int);
  44         int size();
  45
  46         void print(ostream&);
  47
  48         RAbundVector getRAbundVector();
  49         SAbundVector getSAbundVector();
  50         SharedSAbundVector getSharedSAbundVector();
  51         SharedRAbundVector getSharedVector();
  52         OrderVector getOrderVector(map<string,int>*);
  53
  54 private:
  55         vector<individual> data;
  56
  57         int maxRank;
  58         int numBins;
  59         int numSeqs;
  60         string group;
  61 };
  62
  63 #endif
  64