sharedrabundvector.h

   1 #ifndef SHAREDVECTOR_H
   2 #define SHAREDVECTOR_H
   3
   4 /*
   5  *  sharedvector.h
   6  *  Dotur
   7  *
   8  *  Created by Sarah Westcott on 12/5/08.
   9  *  Copyright 2008 Schloss Lab UMASS Amherst. All rights reserved.
  10  *
  11  */
  12
  13 #include <Carbon/Carbon.h>
  14 #include "datavector.hpp"
  15 #include "sharedordervector.h"
  16
  17
  18
  19
  20 class SharedRAbundVector : public DataVector {
  21
  22 public:
  23         SharedRAbundVector();
  24         SharedRAbundVector(int);
  25         //SharedRAbundVector(string, vector<int>);
  26         SharedRAbundVector(const SharedRAbundVector& bv) : DataVector(bv), data(bv.data), maxRank(bv.maxRank), numBins(bv.numBins), numSeqs(bv.numSeqs){};
  27 //      SharedRAbundVector(ifstream&);
  28         ~SharedRAbundVector();
  29
  30         int getNumBins();
  31         int getNumSeqs();
  32         int getMaxRank();
  33         string getGroup();
  34         void setGroup(string);
  35
  36         void set(int, int, string);
  37         individual get(int);
  38         int getAbundance(int);
  39         void push_back(int, int, string);
  40         void pop_back();
  41         void resize(int);
  42         int size();
  43         vector<individual>::reverse_iterator rbegin();
  44         vector<individual>::reverse_iterator rend();
  45
  46         void print(ostream&);
  47
  48         SharedRAbundVector getSharedRAbundVector();
  49         SAbundVector getSAbundVector();
  50         OrderVector getOrderVector(map<string,int>*);
  51         SharedOrderVector getSharedOrderVector();
  52
  53 private:
  54         vector<individual>  data;
  55         int maxRank;
  56         int numBins;
  57         int numSeqs;
  58         string group;
  59 };
  60
  61
  62 #endif
  63