1 #ifndef SHAREDCOMMAND_H
2 #define SHAREDCOMMAND_H
7 * Created by Sarah Westcott on 1/2/09.
8 * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
12 #include <Carbon/Carbon.h>
16 #include "command.hpp"
17 #include "listvector.hpp"
18 #include "inputdata.h"
20 #include "readmatrix.hpp"
22 /* The shared() command:
23 The shared command can only be executed after a successful read.shared command.
24 The shared command parses a .list file and separates it into groups.
25 It outputs a .shared file containing the OTU information for each group.
26 There are no shared command parameters. The shared command should be in the following format: shared(). */
31 class SharedCommand : public Command {
39 void printSharedData();
40 GlobalData* globaldata;
45 map<string, SharedRAbundVector*>::iterator it;